Manganese in PDB 5z5l: Crystal Structure of Cona-R5M

The structure of Crystal Structure of Cona-R5M, PDB code: 5z5l was solved by R.T.Hu, J.H.Gan, G.S.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	125.94 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.415, 64.086, 126.106, 90.00, 92.90, 90.00
R / Rfree (%)	20.1 / 27.7

The structure of Crystal Structure of Cona-R5M also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Crystal Structure of Cona-R5M (pdb code 5z5l). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Cona-R5M, PDB code: 5z5l:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of Cona-R5M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Cona-R5M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:46.1 occ:1.00 O A:HOH409 2.1 36.1 1.0 OE2 A:GLU8 2.4 40.0 1.0 NE2 A:HIS24 2.4 44.5 1.0 OD1 A:ASP19 2.4 48.6 1.0 CG A:ASP19 3.3 50.9 1.0 CE1 A:HIS24 3.3 46.9 1.0 CD A:GLU8 3.4 43.8 1.0 CD2 A:HIS24 3.4 45.3 1.0 OD2 A:ASP19 3.6 44.2 1.0 OE1 A:GLU8 3.7 41.1 1.0 CB A:ASP10 3.7 46.4 1.0 O A:HOH413 3.9 43.2 1.0 CA A:CA302 4.0 45.7 1.0 OG A:SER34 4.2 50.5 1.0 CB A:ASP19 4.4 53.8 1.0 ND1 A:HIS24 4.4 45.2 1.0 CG A:HIS24 4.5 43.5 1.0 CA A:ASP19 4.6 56.0 1.0 CG A:GLU8 4.7 44.8 1.0 O A:VAL32 4.7 42.2 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of Cona-R5M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Cona-R5M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:50.6 occ:1.00 O B:HOH408 1.9 44.7 1.0 O B:HOH402 2.3 51.2 1.0 OD1 B:ASP19 2.5 47.4 1.0 OE2 B:GLU8 2.6 43.9 1.0 CG B:ASP19 3.0 51.8 1.0 OD2 B:ASP19 3.2 43.1 1.0 CD B:GLU8 3.5 42.3 1.0 OE1 B:GLU8 3.5 41.2 1.0 OG B:SER34 4.0 56.3 1.0 CB B:ASP19 4.2 53.5 1.0 CA B:CA302 4.3 50.9 1.0 O B:VAL32 4.4 39.5 1.0 CA B:ASP19 4.7 59.6 1.0 CG B:GLU8 4.9 45.6 1.0 CB B:HIS24 4.9 48.9 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of Cona-R5M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Cona-R5M within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn301 b:47.1 occ:1.00 O C:HOH404 1.9 56.1 1.0 NE2 C:HIS24 2.2 56.5 1.0 O C:HOH402 2.3 37.8 1.0 OE2 C:GLU8 2.4 52.8 1.0 CE1 C:HIS24 3.1 62.5 1.0 CD2 C:HIS24 3.2 58.0 1.0 CB C:ASP10 3.4 58.4 0.0 CD C:GLU8 3.4 50.0 1.0 OE1 C:GLU8 3.8 49.9 1.0 O C:HOH407 4.0 44.5 1.0 OG C:SER34 4.2 45.1 1.0 ND1 C:HIS24 4.3 59.6 1.0 CG C:HIS24 4.3 55.9 1.0 CA C:CA302 4.3 51.7 1.0 CD C:PRO20 4.5 53.1 1.0 O C:VAL32 4.6 41.5 1.0 CG C:GLU8 4.7 47.8 1.0 CA C:ASP10 4.8 56.1 0.0

Manganese binding site 4 out of 4 in the Crystal Structure of Cona-R5M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Cona-R5M within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn301 b:50.4 occ:1.00 O D:HOH404 2.2 34.7 1.0 OE2 D:GLU8 2.2 50.4 1.0 CD D:GLU8 3.3 48.8 1.0 OE1 D:GLU8 3.6 49.7 1.0 CB D:ASP10 3.9 54.5 1.0 O D:HOH417 4.1 50.0 1.0 CA D:CA302 4.1 49.2 1.0 OG D:SER34 4.1 57.7 1.0 CB D:ASP19 4.4 55.5 1.0 O D:VAL32 4.5 43.8 1.0 CG D:GLU8 4.6 46.7 1.0 CA D:ASP19 4.6 59.7 1.0

R.T.Hu, J.H.Gan, G.S.Chen. Crystal Structure of Cona-R5M To Be Published.