Manganese in PDB 5z2k: Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus

The structure of Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus, PDB code: 5z2k was solved by G.Saini, N.Sharma, V.Dalal, P.Kumar, A.K.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	81.58 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	94.190, 94.190, 94.340, 90.00, 90.00, 120.00
R / Rfree (%)	14.5 / 16.5

The binding sites of Manganese atom in the Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus (pdb code 5z2k). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus, PDB code: 5z2k:

Manganese binding site 1 out of 1 in the Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of S38A Mutant Mn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:15.8 occ:1.00 OE2 A:GLU172 2.2 15.8 1.0 OD2 A:ASP247 2.2 16.1 1.0 NE2 A:HIS39 2.2 16.4 1.0 OD1 A:ASP247 2.2 15.1 1.0 NE2 A:HIS106 2.2 14.4 1.0 OE1 A:GLU172 2.3 14.1 1.0 CG A:ASP247 2.5 16.2 1.0 CD A:GLU172 2.6 14.3 1.0 CD2 A:HIS106 3.2 14.1 1.0 CE1 A:HIS39 3.2 18.1 1.0 CD2 A:HIS39 3.2 19.5 1.0 CE1 A:HIS106 3.3 15.1 1.0 ND2 A:ASN193 3.9 19.1 1.0 CB A:ASP247 4.0 15.2 1.0 CG A:GLU172 4.1 14.9 1.0 ND1 A:HIS39 4.3 18.1 1.0 O A:HOH572 4.3 21.8 1.0 O A:HOH520 4.3 15.3 1.0 CG A:HIS39 4.3 19.0 1.0 CG A:HIS106 4.4 13.0 1.0 ND1 A:HIS106 4.4 15.2 1.0 CG A:ASN193 4.5 19.6 1.0 N A:ASN193 4.7 19.6 1.0 O A:HOH591 4.8 37.9 1.0 CA A:ASP247 4.9 14.7 1.0 CB A:ASN193 4.9 21.3 1.0 CB A:GLU172 5.0 14.6 1.0 CG2 A:VAL246 5.0 15.0 1.0

G.Saini, N.Sharma, V.Dalal, A.Warghane, D.K.Ghosh, P.Kumar, A.K.Sharma. The Analysis of Subtle Internal Communications Through Mutation Studies in Periplasmic Metal Uptake Protein Clas-ZNUA2 J. Struct. Biol. V. 204 228 2018.
ISSN: ESSN 1095-8657
PubMed: 30125692
DOI: 10.1016/J.JSB.2018.08.013