Manganese in PDB 5yvs: Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp

The structure of Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp, PDB code: 5yvs was solved by S.W.Groetzinger, E.Strillinger, A.Frank, J.Eppinger, M.Groll, S.T.Arold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.58 / 2.35
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	57.920, 104.840, 129.360, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 25

The binding sites of Manganese atom in the Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp (pdb code 5yvs). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp, PDB code: 5yvs:

Manganese binding site 1 out of 1 in the Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Archaeal Halo-Thermophilic Red Sea Brine Pool Alcohol Dehydrogenase Adh/D1 Bound to Nadp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:64.3 occ:1.00 OD1 A:ASP204 2.1 88.3 1.0 NE2 A:HIS288 2.1 81.7 1.0 H5N A:NDP502 2.1 89.8 1.0 NE2 A:HIS273 2.2 74.4 1.0 NE2 A:HIS208 2.5 54.1 1.0 C5N A:NDP502 2.9 74.9 1.0 CG A:ASP204 2.9 72.0 1.0 CD2 A:HIS288 2.9 78.6 1.0 OD2 A:ASP204 3.0 76.7 1.0 CE1 A:HIS273 3.1 78.6 1.0 CD2 A:HIS273 3.2 77.2 1.0 CE1 A:HIS288 3.3 80.8 1.0 CD2 A:HIS208 3.3 54.5 1.0 H6N A:NDP502 3.3 81.7 1.0 CE1 A:HIS208 3.3 53.2 1.0 C6N A:NDP502 3.4 68.1 1.0 H41N A:NDP502 3.8 91.8 1.0 CD1 A:LEU292 3.9 50.6 1.0 C4N A:NDP502 3.9 76.5 1.0 CG A:HIS288 4.2 79.0 1.0 ND1 A:HIS273 4.3 78.2 1.0 ND1 A:HIS288 4.3 79.8 1.0 ND1 A:HIS208 4.3 53.1 1.0 CG A:HIS208 4.3 51.2 1.0 CG A:HIS273 4.4 77.5 1.0 H42N A:NDP502 4.4 91.8 1.0 CB A:ASP204 4.4 52.7 1.0 O A:ASP204 4.7 58.7 1.0 N1N A:NDP502 4.8 65.0 1.0 CA A:ASP204 4.9 64.7 1.0 H2D A:NDP502 4.9 73.3 1.0 CG A:LEU292 5.0 61.2 1.0

S.W.Groetzinger, R.Karan, E.Strillinger, S.Bader, A.Frank, I.S.Al Rowaihi, A.Akal, W.Wackerow, J.A.Archer, M.Rueping, D.Weuster-Botz, M.Groll, J.Eppinger, S.T.Arold. Identification and Experimental Characterization of An Extremophilic Brine Pool Alcohol Dehydrogenase From Single Amplified Genomes Acs Chem. Biol. V. 13 161 2018.
ISSN: ESSN 1554-8937
PubMed: 29188989
DOI: 10.1021/ACSCHEMBIO.7B00792