Manganese in PDB 5yh1: Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain

The structure of Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain, PDB code: 5yh1 was solved by Y.Song, X.P.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.25 / 2.18
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	132.500, 132.500, 212.245, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 20.2

The binding sites of Manganese atom in the Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain (pdb code 5yh1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain, PDB code: 5yh1:

Manganese binding site 1 out of 1 in the Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn805 b:42.7 occ:1.00 OD2 A:ASP366 2.1 24.9 1.0 O A:HOH909 2.2 30.5 1.0 O A:HOH929 2.2 34.4 1.0 OD2 A:ASP528 2.2 33.0 1.0 OD1 A:ASP436 2.3 28.8 1.0 NE2 A:HIS462 2.4 28.1 1.0 CG A:ASP436 3.0 28.0 1.0 CG A:ASP366 3.1 24.9 1.0 CE1 A:HIS462 3.1 28.5 1.0 CG A:ASP528 3.2 30.8 1.0 OD2 A:ASP436 3.2 27.5 1.0 OD1 A:ASP528 3.4 31.5 1.0 CB A:ASP366 3.4 24.2 1.0 CD2 A:HIS462 3.5 27.7 1.0 OD1 A:ASP366 4.2 24.7 1.0 OH A:TYR494 4.3 37.4 1.0 CE1 A:HIS463 4.3 27.1 1.0 ND1 A:HIS462 4.4 29.1 1.0 CB A:ASP436 4.4 27.0 1.0 CB A:ASP528 4.5 29.2 1.0 CG A:HIS462 4.6 28.0 1.0 N A:ALA498 4.6 25.7 1.0 CB A:ALA498 4.6 24.1 1.0 NE2 A:HIS463 4.8 27.3 1.0 CB A:THR497 4.8 25.4 1.0 CA A:ASP366 4.8 23.7 1.0 OD2 A:ASP364 4.8 29.9 1.0 OD1 A:ASP364 4.8 30.1 1.0 O A:HOH1006 5.0 39.9 1.0 CZ A:TYR494 5.0 38.3 1.0

Y.Song, X.P.Liu. Member of S1P Family of Ribosomal Proteins PF0399 Dhh Domain To Be Published.