Atomistry » Manganese » PDB 5wly-5yvs » 5xnl
Atomistry »
  Manganese »
    PDB 5wly-5yvs »
      5xnl »

Manganese in PDB 5xnl: Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

Enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

All present enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;

Other elements in 5xnl:

The structure of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:

Magnesium (Mg) 314 atoms
Iron (Fe) 4 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum (pdb code 5xnl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnl:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 1 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:13.7
occ:1.00
 MN1 A:OEX401 0.0 13.7 1.0
O3 A:OEX401 1.9 14.4 1.0
OE2 A:GLU189 2.0 35.6 1.0
O1 A:OEX401 2.0 13.1 1.0
NE2 A:HIS332 2.0 27.1 1.0
OD2 A:ASP342 2.2 28.7 1.0
O5 A:OEX401 2.6 14.8 1.0
CD2 A:HIS332 2.9 26.6 1.0
MN2 A:OEX401 3.0 14.4 1.0
MN3 A:OEX401 3.0 14.7 1.0
CE1 A:HIS332 3.1 32.3 1.0
CD A:GLU189 3.1 34.9 1.0
CG A:ASP342 3.2 27.2 1.0
OD1 A:ASP342 3.4 24.9 1.0
OE1 A:GLU333 3.6 38.3 1.0
O2 A:OEX401 3.7 17.2 1.0
OE2 C:GLU354 3.8 35.9 1.0
NE2 A:HIS337 3.8 39.3 1.0
OE1 A:GLU189 3.8 37.6 1.0
CA1 A:OEX401 3.9 16.5 1.0
CG A:GLU189 4.0 35.8 1.0
CG A:HIS332 4.1 26.7 1.0
ND1 A:HIS332 4.1 26.3 1.0
CD A:GLU333 4.3 35.0 1.0
CE1 A:HIS337 4.3 37.5 1.0
OE1 C:GLU354 4.5 35.9 1.0
CD C:GLU354 4.5 35.8 1.0
O A:HOH1005 4.5 48.9 1.0
CB A:ASP342 4.6 25.5 1.0
OXT A:ALA344 4.6 39.8 1.0
CG1 A:VAL185 4.7 30.4 1.0
OE2 A:GLU333 4.7 36.5 1.0
O4 A:OEX401 4.9 19.8 1.0
CD2 A:HIS337 5.0 37.1 1.0

Manganese binding site 2 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 2 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:14.4
occ:1.00
 MN2 A:OEX401 0.0 14.4 1.0
OD1 A:ASP342 1.9 24.9 1.0
OE1 C:GLU354 1.9 35.9 1.0
OXT A:ALA344 2.0 39.8 1.0
O3 A:OEX401 2.1 14.4 1.0
O1 A:OEX401 2.1 13.1 1.0
O2 A:OEX401 2.2 17.2 1.0
CD C:GLU354 2.6 35.8 1.0
OE2 C:GLU354 2.8 35.9 1.0
CG A:ASP342 2.8 27.2 1.0
MN1 A:OEX401 3.0 13.7 1.0
MN3 A:OEX401 3.1 14.7 1.0
OD2 A:ASP342 3.1 28.7 1.0
C A:ALA344 3.2 45.6 1.0
NE2 A:HIS337 3.8 39.3 1.0
O A:HOH1005 3.8 48.9 1.0
N A:ALA344 3.9 47.0 1.0
O5 A:OEX401 3.9 14.8 1.0
CA1 A:OEX401 3.9 16.5 1.0
CA A:ALA344 4.0 44.7 1.0
CG C:GLU354 4.1 33.6 1.0
O A:ALA344 4.1 48.3 1.0
CB A:ASP342 4.1 25.5 1.0
CD2 A:HIS337 4.3 37.1 1.0
O A:HOH1080 4.4 40.1 1.0
C A:ASP342 4.4 29.8 1.0
CA A:ASP342 4.4 30.1 1.0
CB A:ALA344 4.4 37.8 1.0
CB C:GLU354 4.4 36.6 1.0
OE1 A:GLU333 4.5 38.3 1.0
OE2 A:GLU189 4.6 35.6 1.0
O A:ASP342 4.6 29.4 1.0
N A:LEU343 4.7 40.4 1.0
O4 A:OEX401 4.7 19.8 1.0
NE2 A:HIS332 4.8 27.1 1.0
C A:LEU343 4.9 45.0 1.0
CE1 A:HIS337 4.9 37.5 1.0

Manganese binding site 3 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 3 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:14.7
occ:1.00
 MN3 A:OEX401 0.0 14.7 1.0
OE2 C:GLU354 1.9 35.9 1.0
O5 A:OEX401 2.0 14.8 1.0
OE1 A:GLU333 2.0 38.3 1.0
O3 A:OEX401 2.0 14.4 1.0
O4 A:OEX401 2.0 19.8 1.0
O2 A:OEX401 2.0 17.2 1.0
CD A:GLU333 2.9 35.0 1.0
CD C:GLU354 3.0 35.8 1.0
MN1 A:OEX401 3.0 13.7 1.0
MN2 A:OEX401 3.1 14.4 1.0
OE2 A:GLU333 3.1 36.5 1.0
O1 A:OEX401 3.3 13.1 1.0
CA1 A:OEX401 3.5 16.5 1.0
MN4 A:OEX401 3.6 18.4 1.0
OE1 C:GLU354 3.6 35.9 1.0
OD1 A:ASP170 3.7 36.8 1.0
NH2 C:ARG357 3.8 48.6 1.0
OXT A:ALA344 4.0 39.8 1.0
CG C:GLU354 4.1 33.6 1.0
CG A:GLU333 4.3 35.9 1.0
NE2 A:HIS337 4.3 39.3 1.0
OD2 A:ASP170 4.3 36.6 1.0
NE2 A:HIS332 4.4 27.1 1.0
CG A:ASP170 4.4 35.7 1.0
OE2 A:GLU189 4.5 35.6 1.0
OD1 A:ASP342 4.5 24.9 1.0
CZ C:ARG357 4.6 35.0 1.0
CD2 A:HIS332 4.6 26.6 1.0
NH1 C:ARG357 4.7 34.9 1.0
CB A:GLU333 4.7 35.9 1.0
OD2 A:ASP342 4.7 28.7 1.0
CE1 A:HIS337 4.8 37.5 1.0

Manganese binding site 4 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 4 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:18.4
occ:1.00
 MN4 A:OEX401 0.0 18.4 1.0
OD1 A:ASP170 2.0 36.8 1.0
O4 A:OEX401 2.2 19.8 1.0
OE2 A:GLU333 2.2 36.5 1.0
CG A:ASP170 3.2 35.7 1.0
O5 A:OEX401 3.3 14.8 1.0
CD A:GLU333 3.3 35.0 1.0
MN3 A:OEX401 3.6 14.7 1.0
O A:SER169 3.6 30.3 1.0
CA A:ASP170 3.8 23.1 1.0
OE1 A:GLU333 3.8 38.3 1.0
O A:HOH1085 3.9 42.7 1.0
C A:SER169 3.9 29.3 1.0
O A:HOH1049 3.9 40.4 1.0
N A:ASP170 4.0 21.4 1.0
CB A:ASP170 4.1 34.6 1.0
OD2 A:ASP170 4.1 36.6 1.0
OD1 A:ASP61 4.1 50.3 1.0
OG A:SER169 4.2 34.7 1.0
O A:HOH1042 4.2 43.2 1.0
NH2 C:ARG357 4.5 48.6 1.0
CB A:SER169 4.5 34.0 1.0
CG A:GLU333 4.5 35.9 1.0
O A:HOH1020 4.6 36.0 1.0
CA1 A:OEX401 4.6 16.5 1.0
O2 A:OEX401 4.7 17.2 1.0
CA A:SER169 4.9 27.2 1.0

Manganese binding site 5 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 5 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:13.7
occ:1.00
 MN1 a:OEX401 0.0 13.7 1.0
O3 a:OEX401 1.9 14.4 1.0
OE2 a:GLU189 2.0 35.6 1.0
O1 a:OEX401 2.0 13.1 1.0
NE2 a:HIS332 2.0 27.1 1.0
OD2 a:ASP342 2.2 28.7 1.0
O5 a:OEX401 2.6 14.8 1.0
CD2 a:HIS332 2.9 26.6 1.0
MN2 a:OEX401 3.0 14.4 1.0
MN3 a:OEX401 3.0 14.7 1.0
CE1 a:HIS332 3.1 32.3 1.0
CD a:GLU189 3.1 34.9 1.0
CG a:ASP342 3.2 27.2 1.0
OD1 a:ASP342 3.4 24.9 1.0
OE1 a:GLU333 3.6 38.3 1.0
O2 a:OEX401 3.7 17.2 1.0
OE2 c:GLU354 3.8 35.9 1.0
NE2 a:HIS337 3.8 39.3 1.0
OE1 a:GLU189 3.8 37.6 1.0
CA1 a:OEX401 3.9 16.5 1.0
CG a:GLU189 4.0 35.8 1.0
CG a:HIS332 4.1 26.7 1.0
ND1 a:HIS332 4.1 26.3 1.0
CD a:GLU333 4.3 35.0 1.0
CE1 a:HIS337 4.3 37.5 1.0
OE1 c:GLU354 4.5 35.9 1.0
CD c:GLU354 4.5 35.8 1.0
O a:HOH1005 4.5 48.9 1.0
CB a:ASP342 4.6 25.5 1.0
OXT a:ALA344 4.6 39.8 1.0
CG1 a:VAL185 4.7 30.4 1.0
OE2 a:GLU333 4.7 36.5 1.0
O4 a:OEX401 4.9 19.8 1.0
CD2 a:HIS337 5.0 37.1 1.0

Manganese binding site 6 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 6 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:14.4
occ:1.00
 MN2 a:OEX401 0.0 14.4 1.0
OD1 a:ASP342 1.9 24.9 1.0
OE1 c:GLU354 1.9 35.9 1.0
OXT a:ALA344 2.0 39.8 1.0
O3 a:OEX401 2.1 14.4 1.0
O1 a:OEX401 2.1 13.1 1.0
O2 a:OEX401 2.2 17.2 1.0
CD c:GLU354 2.6 35.8 1.0
OE2 c:GLU354 2.8 35.9 1.0
CG a:ASP342 2.8 27.2 1.0
MN1 a:OEX401 3.0 13.7 1.0
MN3 a:OEX401 3.1 14.7 1.0
OD2 a:ASP342 3.1 28.7 1.0
C a:ALA344 3.2 45.6 1.0
NE2 a:HIS337 3.8 39.3 1.0
O a:HOH1005 3.8 48.9 1.0
N a:ALA344 3.9 47.0 1.0
O5 a:OEX401 3.9 14.8 1.0
CA1 a:OEX401 3.9 16.5 1.0
CA a:ALA344 4.0 44.7 1.0
CG c:GLU354 4.1 33.6 1.0
O a:ALA344 4.1 48.3 1.0
CB a:ASP342 4.1 25.5 1.0
CD2 a:HIS337 4.3 37.1 1.0
O a:HOH1080 4.4 40.1 1.0
C a:ASP342 4.4 29.8 1.0
CA a:ASP342 4.4 30.1 1.0
CB a:ALA344 4.4 37.8 1.0
CB c:GLU354 4.4 36.6 1.0
OE1 a:GLU333 4.5 38.3 1.0
O a:ASP342 4.6 29.4 1.0
OE2 a:GLU189 4.6 35.6 1.0
N a:LEU343 4.7 40.4 1.0
O4 a:OEX401 4.7 19.8 1.0
NE2 a:HIS332 4.8 27.1 1.0
C a:LEU343 4.9 45.0 1.0
CE1 a:HIS337 4.9 37.5 1.0

Manganese binding site 7 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 7 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:14.7
occ:1.00
 MN3 a:OEX401 0.0 14.7 1.0
OE2 c:GLU354 1.9 35.9 1.0
O5 a:OEX401 2.0 14.8 1.0
OE1 a:GLU333 2.0 38.3 1.0
O3 a:OEX401 2.0 14.4 1.0
O4 a:OEX401 2.0 19.8 1.0
O2 a:OEX401 2.0 17.2 1.0
CD a:GLU333 2.9 35.0 1.0
CD c:GLU354 3.0 35.8 1.0
MN1 a:OEX401 3.0 13.7 1.0
MN2 a:OEX401 3.1 14.4 1.0
OE2 a:GLU333 3.1 36.5 1.0
O1 a:OEX401 3.3 13.1 1.0
CA1 a:OEX401 3.5 16.5 1.0
MN4 a:OEX401 3.6 18.4 1.0
OE1 c:GLU354 3.6 35.9 1.0
OD1 a:ASP170 3.7 36.8 1.0
NH2 c:ARG357 3.8 48.6 1.0
OXT a:ALA344 4.0 39.8 1.0
CG c:GLU354 4.1 33.6 1.0
CG a:GLU333 4.3 35.9 1.0
NE2 a:HIS337 4.3 39.3 1.0
OD2 a:ASP170 4.3 36.6 1.0
NE2 a:HIS332 4.4 27.1 1.0
CG a:ASP170 4.4 35.7 1.0
OE2 a:GLU189 4.5 35.6 1.0
OD1 a:ASP342 4.5 24.9 1.0
CZ c:ARG357 4.6 35.0 1.0
CD2 a:HIS332 4.6 26.6 1.0
NH1 c:ARG357 4.7 34.9 1.0
CB a:GLU333 4.7 35.9 1.0
OD2 a:ASP342 4.7 28.7 1.0
CE1 a:HIS337 4.8 37.5 1.0

Manganese binding site 8 out of 8 in 5xnl

Go back to Manganese Binding Sites List in 5xnl
Manganese binding site 8 out of 8 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:18.4
occ:1.00
 MN4 a:OEX401 0.0 18.4 1.0
OD1 a:ASP170 2.0 36.8 1.0
O4 a:OEX401 2.2 19.8 1.0
OE2 a:GLU333 2.2 36.5 1.0
CG a:ASP170 3.2 35.7 1.0
O5 a:OEX401 3.3 14.8 1.0
CD a:GLU333 3.3 35.0 1.0
MN3 a:OEX401 3.6 14.7 1.0
O a:SER169 3.6 30.3 1.0
CA a:ASP170 3.8 23.1 1.0
OE1 a:GLU333 3.8 38.3 1.0
O a:HOH1085 3.9 42.7 1.0
C a:SER169 3.9 29.3 1.0
O a:HOH1049 3.9 40.4 1.0
N a:ASP170 4.0 21.4 1.0
CB a:ASP170 4.1 34.6 1.0
OD2 a:ASP170 4.1 36.6 1.0
OD1 a:ASP61 4.1 50.3 1.0
OG a:SER169 4.2 34.7 1.0
O a:HOH1042 4.2 43.2 1.0
NH2 c:ARG357 4.5 48.6 1.0
CB a:SER169 4.5 34.0 1.0
CG a:GLU333 4.5 35.9 1.0
O a:HOH1020 4.6 36.0 1.0
CA1 a:OEX401 4.6 16.5 1.0
O2 a:OEX401 4.7 17.2 1.0
CA a:SER169 4.9 27.2 1.0

Reference:

X.Su, J.Ma, X.Wei, P.Cao, D.Zhu, W.Chang, Z.Liu, X.Zhang, M.Li. Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327
Page generated: Sun Oct 6 03:26:34 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy