Atomistry » Manganese » PDB 5wly-5yvs » 5xds
Atomistry »
  Manganese »
    PDB 5wly-5yvs »
      5xds »

Manganese in PDB 5xds: Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor:
4.2.1.19;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor, PDB code: 5xds was solved by D.Kumar, B.Jha, M.S.Ahangar, B.B.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.75
Space group P 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 112.530, 112.530, 112.530, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 18.2

Other elements in 5xds:

The structure of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor (pdb code 5xds). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor, PDB code: 5xds:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 5xds

Go back to Manganese Binding Sites List in 5xds
Manganese binding site 1 out of 2 in the Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:15.6
occ:0.80
NE2 A:HIS73 2.2 16.5 1.0
O A:HOH436 2.2 19.0 1.0
OE1 A:GLU77 2.2 17.1 1.0
N2 A:83O304 2.3 23.2 1.0
NE2 A:HIS152 2.3 20.4 1.0
CD A:GLU77 3.1 20.7 1.0
CE1 A:HIS73 3.1 16.6 1.0
C1 A:83O304 3.2 22.4 1.0
CD2 A:HIS152 3.2 20.2 1.0
CD2 A:HIS73 3.2 17.7 1.0
CE1 A:HIS152 3.3 24.2 1.0
C3 A:83O304 3.4 24.8 1.0
OE2 A:GLU77 3.5 21.2 1.0
C4 A:83O304 3.9 29.5 1.0
ND1 A:HIS73 4.3 16.4 1.0
CG A:GLU77 4.3 18.0 1.0
CG A:HIS73 4.4 18.6 1.0
N11 A:83O304 4.4 24.2 1.0
CG A:HIS152 4.4 18.9 1.0
ND1 A:HIS152 4.4 24.2 1.0
N10 A:83O304 4.5 24.6 1.0
O A:HOH408 4.5 29.5 1.0
CB A:GLU77 4.6 18.3 1.0

Manganese binding site 2 out of 2 in 5xds

Go back to Manganese Binding Sites List in 5xds
Manganese binding site 2 out of 2 in the Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:14.9
occ:0.80
OE1 A:GLU180 2.2 19.3 1.0
NE2 A:HIS176 2.2 18.4 1.0
NE2 A:HIS47 2.3 20.3 1.0
O A:HOH426 2.4 20.8 1.0
CD A:GLU180 3.1 21.6 1.0
CE1 A:HIS176 3.2 17.4 1.0
CD2 A:HIS176 3.2 16.5 1.0
CE1 A:HIS47 3.2 24.2 1.0
CD2 A:HIS47 3.3 21.0 1.0
OE2 A:GLU180 3.4 22.6 1.0
ND1 A:HIS176 4.3 16.4 1.0
CG A:HIS176 4.3 16.8 1.0
ND1 A:HIS47 4.4 22.4 1.0
CG A:HIS47 4.4 19.6 1.0
CG A:GLU180 4.5 18.1 1.0
CE A:MET48 4.7 18.6 1.0
CE A:MET107 4.8 22.3 1.0
CB A:GLU180 4.9 15.4 1.0

Reference:

D.Kumar, B.Jha, M.S.Ahangar, B.B.Kumar. Crystal Structure of Mycobacterium Tuberculosis Hisb Bound with An Inhibitor To Be Published.
Page generated: Tue Dec 15 04:48:54 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy