Manganese in PDB 5x2j: Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus

The structure of Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus, PDB code: 5x2j was solved by D.S.Retnoningrum, H.Yoshida, S.Arumsari, S.Kamitori, W.T.Ismaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.21 / 1.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	57.362, 57.362, 105.762, 90.00, 90.00, 120.00
R / Rfree (%)	14.2 / 18.5

The binding sites of Manganese atom in the Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus (pdb code 5x2j). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus, PDB code: 5x2j:

Manganese binding site 1 out of 1 in the Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Recombinant Hybrid Manganese Superoxide Dismutase From Staphylococcus Equorum and Staphylococcus Saprophyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:8.6 occ:1.00 OD2 A:ASP161 2.0 9.7 1.0 O A:HOH435 2.1 8.7 1.0 NE2 A:HIS81 2.1 11.2 1.0 NE2 A:HIS165 2.2 8.7 1.0 O A:HOH303 2.2 25.0 1.0 NE2 A:HIS27 2.2 11.1 1.0 CG A:ASP161 3.0 8.7 1.0 CE1 A:HIS81 3.1 11.6 1.0 CE1 A:HIS27 3.1 11.0 1.0 CE1 A:HIS165 3.1 8.3 1.0 CD2 A:HIS27 3.2 9.7 1.0 CD2 A:HIS81 3.2 11.1 1.0 CD2 A:HIS165 3.2 10.0 1.0 OD1 A:ASP161 3.5 9.1 1.0 ND1 A:HIS81 4.2 10.6 1.0 ND1 A:HIS27 4.2 11.2 1.0 ND1 A:HIS165 4.3 10.4 1.0 CG A:HIS81 4.3 10.1 1.0 CG A:HIS27 4.3 11.7 1.0 CB A:ASP161 4.3 10.5 1.0 CG A:HIS165 4.3 9.6 1.0 CZ2 A:TRP128 4.3 10.3 1.0 NE2 A:GLN146 4.6 8.3 1.0 CB A:TRP163 4.6 7.4 1.0 CG A:TRP163 4.7 5.9 1.0 CD1 A:TRP163 5.0 5.9 1.0 CB A:ALA166 5.0 12.5 1.0

D.S.Retnoningrum, H.Yoshida, S.Arumsari, S.Kamitori, W.T.Ismaya. The First Crystal Structure of Manganese Superoxide Dismutase From the Genus Staphylococcus Acta Crystallogr F Struct V. 74 135 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 29497016
DOI: 10.1107/S2053230X18001036