Manganese in PDB 5v9f: Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.

Enzymatic activity of Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.

Protein crystallography data

Other elements in 5v9f:

Manganese Binding Sites:

Manganese binding site 1 out of 3 in 5v9f

Manganese Binding Sites List in 5v9f

Manganese binding site 1 out of 3 in the Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:39.9 occ:1.00 O2G A:GTP704 2.1 33.2 1.0 O1B A:GTP704 2.1 39.3 1.0 O A:HOH805 2.2 35.3 1.0 O A:HOH849 2.2 42.8 1.0 OG1 A:THR291 2.2 40.0 1.0 O A:HOH810 2.3 37.4 1.0 PG A:GTP704 3.3 38.6 1.0 PB A:GTP704 3.4 40.0 1.0 CB A:THR291 3.4 40.6 1.0 OD2 A:ASP310 3.5 40.3 1.0 O3B A:GTP704 3.6 40.2 1.0 O A:HOH893 3.9 37.8 1.0 O1G A:GTP704 4.0 33.7 1.0 O1A A:GTP704 4.0 43.8 1.0 N A:THR291 4.2 40.7 1.0 O A:ASP310 4.3 36.1 1.0 CG A:ASP310 4.3 38.3 1.0 CA A:GLY334 4.3 37.3 1.0 NH1 A:ARG405 4.3 37.1 1.0 CA A:THR291 4.4 41.4 1.0 O2B A:GTP704 4.4 40.3 1.0 CG2 A:THR291 4.4 40.7 1.0 O3A A:GTP704 4.5 44.4 1.0 O3G A:GTP704 4.6 34.2 1.0 OD1 A:ASP311 4.6 30.7 1.0 O A:PHE333 4.6 33.2 1.0 O A:HOH908 4.7 30.9 1.0 N A:VAL335 4.7 38.8 1.0 PA A:GTP704 4.8 49.3 1.0 OD1 A:ASP310 4.9 38.8 1.0 CB A:LYS290 5.0 37.7 1.0

Manganese binding site 2 out of 3 in 5v9f

Manganese Binding Sites List in 5v9f

Manganese binding site 2 out of 3 in the Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn702 b:33.0 occ:1.00 O1 A:SPV705 2.1 31.4 1.0 OD1 A:ASP311 2.2 30.7 1.0 O1G A:GTP704 2.3 33.7 1.0 O2 A:SPV705 2.3 32.9 1.0 NE2 A:HIS264 2.4 32.8 1.0 NZ A:LYS244 2.4 31.7 1.0 C1 A:SPV705 2.9 34.3 1.0 C2 A:SPV705 3.0 34.8 1.0 CG A:ASP311 3.1 32.9 1.0 CD2 A:HIS264 3.3 33.1 1.0 OD2 A:ASP311 3.3 32.5 1.0 CE1 A:HIS264 3.4 32.6 1.0 PG A:GTP704 3.4 38.6 1.0 CE A:LYS244 3.4 32.2 1.0 O3G A:GTP704 3.8 34.2 1.0 O2G A:GTP704 4.0 33.2 1.0 NZ A:LYS290 4.0 36.6 1.0 O2' A:SPV705 4.1 35.1 1.0 O A:HOH893 4.2 37.8 1.0 CE A:LYS290 4.2 37.5 1.0 OG A:SER286 4.3 40.9 0.5 O A:HOH810 4.3 37.4 1.0 CG A:HIS264 4.4 32.2 1.0 ND1 A:HIS264 4.4 32.4 1.0 CB A:ASP311 4.5 33.4 1.0 C3 A:SPV705 4.5 34.8 1.0 CD A:LYS244 4.8 31.6 1.0 O3B A:GTP704 4.8 40.2 1.0 CZ A:PHE485 5.0 28.8 1.0

Manganese binding site 3 out of 3 in 5v9f

Manganese Binding Sites List in 5v9f

Manganese binding site 3 out of 3 in the Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn706 b:64.1 occ:1.00 O A:HOH839 2.2 65.0 1.0 OE2 A:GLU63 2.4 65.6 1.0 CD A:GLU63 3.1 62.6 1.0 OE1 A:GLU63 3.1 62.4 1.0 CG A:GLU63 4.5 63.2 1.0

Reference: