Manganese in PDB 5v2c: Re-Refinement of Crystal Structure of Photosystem II Complex
Enzymatic activity of Re-Refinement of Crystal Structure of Photosystem II Complex
All present enzymatic activity of Re-Refinement of Crystal Structure of Photosystem II Complex:
1.10.3.9;
Protein crystallography data
The structure of Re-Refinement of Crystal Structure of Photosystem II Complex, PDB code: 5v2c
was solved by
J.Wang,
J.M.Wiwczar,
G.W.Brudvig,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
178.62 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.190,
228.510,
286.400,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
9.2 /
16.3
|
Other elements in 5v2c:
The structure of Re-Refinement of Crystal Structure of Photosystem II Complex also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Re-Refinement of Crystal Structure of Photosystem II Complex
(pdb code 5v2c). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Re-Refinement of Crystal Structure of Photosystem II Complex, PDB code: 5v2c:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 1 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn601
b:20.6
occ:1.00
|
MN1
|
A:OEX601
|
0.0
|
20.6
|
1.0
|
|
OE2
|
A:GLU189
|
1.9
|
21.5
|
1.0
|
|
O1
|
A:OEX601
|
1.9
|
22.0
|
1.0
|
|
O3
|
A:OEX601
|
1.9
|
20.2
|
1.0
|
|
NE2
|
A:HIS332
|
2.2
|
20.1
|
1.0
|
|
OD2
|
A:ASP342
|
2.2
|
22.4
|
1.0
|
|
O5
|
A:OEX601
|
2.7
|
21.7
|
1.0
|
|
MN2
|
A:OEX601
|
2.8
|
20.7
|
1.0
|
|
CD
|
A:GLU189
|
2.9
|
27.7
|
1.0
|
|
CE1
|
A:HIS332
|
3.1
|
24.9
|
1.0
|
|
CG
|
A:ASP342
|
3.1
|
21.3
|
1.0
|
|
CD2
|
A:HIS332
|
3.1
|
17.9
|
1.0
|
|
MN3
|
A:OEX601
|
3.3
|
21.2
|
1.0
|
|
OD1
|
A:ASP342
|
3.3
|
21.7
|
1.0
|
|
OE1
|
A:GLU189
|
3.4
|
28.9
|
1.0
|
|
CA1
|
A:OEX601
|
3.5
|
24.0
|
1.0
|
|
O2
|
A:OEX601
|
3.6
|
22.5
|
1.0
|
|
NE2
|
A:HIS337
|
4.0
|
21.2
|
1.0
|
|
OE1
|
A:GLU333
|
4.0
|
20.9
|
1.0
|
|
O
|
A:HOH798
|
4.0
|
31.6
|
1.0
|
|
O
|
A:HOH864
|
4.1
|
38.8
|
1.0
|
|
CG
|
A:GLU189
|
4.1
|
27.8
|
1.0
|
|
ND1
|
A:HIS332
|
4.2
|
20.7
|
1.0
|
|
CG
|
A:HIS332
|
4.3
|
17.4
|
1.0
|
|
OE1
|
C:GLU354
|
4.4
|
20.0
|
1.0
|
|
CG1
|
A:VAL185
|
4.5
|
23.6
|
1.0
|
|
OXT
|
A:ALA344
|
4.5
|
21.1
|
1.0
|
|
CB
|
A:ASP342
|
4.5
|
20.6
|
1.0
|
|
O
|
A:HOH840
|
4.6
|
27.4
|
1.0
|
|
CE1
|
A:HIS337
|
4.7
|
18.9
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
20.5
|
1.0
|
|
CD
|
A:GLU333
|
4.7
|
20.4
|
1.0
|
|
O
|
A:HOH777
|
4.8
|
27.7
|
1.0
|
|
O
|
A:ALA344
|
4.9
|
24.7
|
1.0
|
|
O4
|
A:OEX601
|
4.9
|
26.5
|
1.0
|
|
C
|
A:ALA344
|
4.9
|
26.3
|
1.0
|
|
MN4
|
A:OEX601
|
5.0
|
24.3
|
1.0
|
|
CD
|
C:GLU354
|
5.0
|
22.4
|
1.0
|
|
Manganese binding site 2 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 2 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn601
b:20.7
occ:1.00
|
MN2
|
A:OEX601
|
0.0
|
20.7
|
1.0
|
|
O3
|
A:OEX601
|
1.9
|
20.2
|
1.0
|
|
OXT
|
A:ALA344
|
1.9
|
21.1
|
1.0
|
|
O2
|
A:OEX601
|
2.0
|
22.5
|
1.0
|
|
O1
|
A:OEX601
|
2.0
|
22.0
|
1.0
|
|
OE1
|
C:GLU354
|
2.1
|
20.0
|
1.0
|
|
OD1
|
A:ASP342
|
2.1
|
21.7
|
1.0
|
|
MN1
|
A:OEX601
|
2.8
|
20.6
|
1.0
|
|
C
|
A:ALA344
|
2.9
|
26.3
|
1.0
|
|
MN3
|
A:OEX601
|
2.9
|
21.2
|
1.0
|
|
CD
|
C:GLU354
|
3.0
|
22.4
|
1.0
|
|
CG
|
A:ASP342
|
3.0
|
21.3
|
1.0
|
|
O
|
A:ALA344
|
3.3
|
24.7
|
1.0
|
|
OD2
|
A:ASP342
|
3.3
|
22.4
|
1.0
|
|
OE2
|
C:GLU354
|
3.3
|
20.5
|
1.0
|
|
CA1
|
A:OEX601
|
3.3
|
24.0
|
1.0
|
|
O5
|
A:OEX601
|
3.8
|
21.7
|
1.0
|
|
NE2
|
A:HIS337
|
3.9
|
21.2
|
1.0
|
|
O
|
C:HOH838
|
3.9
|
26.0
|
1.0
|
|
CA
|
A:ALA344
|
4.2
|
26.6
|
1.0
|
|
O
|
A:HOH798
|
4.2
|
31.6
|
1.0
|
|
N
|
A:ALA344
|
4.3
|
25.4
|
1.0
|
|
CD2
|
A:HIS337
|
4.4
|
21.5
|
1.0
|
|
O4
|
A:OEX601
|
4.4
|
26.5
|
1.0
|
|
CB
|
A:ASP342
|
4.4
|
20.6
|
1.0
|
|
OE2
|
A:GLU189
|
4.4
|
21.5
|
1.0
|
|
CG
|
C:GLU354
|
4.4
|
22.9
|
1.0
|
|
OE1
|
A:GLU333
|
4.5
|
20.9
|
1.0
|
|
NE2
|
A:HIS332
|
4.6
|
20.1
|
1.0
|
|
NH2
|
C:ARG357
|
4.6
|
24.4
|
1.0
|
|
CA
|
A:ASP342
|
4.8
|
20.3
|
1.0
|
|
CB
|
C:GLU354
|
4.8
|
26.4
|
1.0
|
|
O
|
A:HOH777
|
4.8
|
27.7
|
1.0
|
|
NH1
|
C:ARG357
|
4.9
|
27.5
|
1.0
|
|
C
|
A:ASP342
|
4.9
|
21.6
|
1.0
|
|
Manganese binding site 3 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 3 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn601
b:21.2
occ:1.00
|
MN3
|
A:OEX601
|
0.0
|
21.2
|
1.0
|
|
O4
|
A:OEX601
|
1.9
|
26.5
|
1.0
|
|
O2
|
A:OEX601
|
1.9
|
22.5
|
1.0
|
|
OE1
|
A:GLU333
|
2.0
|
20.9
|
1.0
|
|
O3
|
A:OEX601
|
2.0
|
20.2
|
1.0
|
|
OE2
|
C:GLU354
|
2.2
|
20.5
|
1.0
|
|
O5
|
A:OEX601
|
2.3
|
21.7
|
1.0
|
|
MN2
|
A:OEX601
|
2.9
|
20.7
|
1.0
|
|
CD
|
A:GLU333
|
2.9
|
20.4
|
1.0
|
|
MN4
|
A:OEX601
|
2.9
|
24.3
|
1.0
|
|
CD
|
C:GLU354
|
3.1
|
22.4
|
1.0
|
|
OE2
|
A:GLU333
|
3.3
|
20.7
|
1.0
|
|
MN1
|
A:OEX601
|
3.3
|
20.6
|
1.0
|
|
OE1
|
C:GLU354
|
3.4
|
20.0
|
1.0
|
|
CA1
|
A:OEX601
|
3.4
|
24.0
|
1.0
|
|
O1
|
A:OEX601
|
3.5
|
22.0
|
1.0
|
|
NH2
|
C:ARG357
|
4.0
|
24.4
|
1.0
|
|
O
|
C:HOH735
|
4.1
|
24.9
|
1.0
|
|
OD2
|
A:ASP170
|
4.1
|
23.3
|
1.0
|
|
NE2
|
A:HIS337
|
4.2
|
21.2
|
1.0
|
|
NE2
|
A:HIS332
|
4.2
|
20.1
|
1.0
|
|
CG
|
A:GLU333
|
4.3
|
20.1
|
1.0
|
|
O
|
A:HOH744
|
4.3
|
22.7
|
1.0
|
|
OD1
|
A:ASP170
|
4.4
|
25.6
|
1.0
|
|
OXT
|
A:ALA344
|
4.5
|
21.1
|
1.0
|
|
CD2
|
A:HIS332
|
4.5
|
17.9
|
1.0
|
|
CG
|
C:GLU354
|
4.5
|
22.9
|
1.0
|
|
O
|
A:HOH803
|
4.6
|
26.1
|
1.0
|
|
O
|
A:HOH792
|
4.6
|
22.0
|
1.0
|
|
OD1
|
A:ASP342
|
4.6
|
21.7
|
1.0
|
|
CG
|
A:ASP170
|
4.7
|
22.0
|
1.0
|
|
CB
|
A:GLU333
|
4.7
|
20.0
|
1.0
|
|
CE1
|
A:HIS337
|
4.8
|
18.9
|
1.0
|
|
O
|
A:ALA344
|
4.8
|
24.7
|
1.0
|
|
OD2
|
A:ASP342
|
4.9
|
22.4
|
1.0
|
|
O
|
A:HOH840
|
4.9
|
27.4
|
1.0
|
|
OE2
|
A:GLU189
|
4.9
|
21.5
|
1.0
|
|
Manganese binding site 4 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 4 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn601
b:24.3
occ:1.00
|
MN4
|
A:OEX601
|
0.0
|
24.3
|
1.0
|
|
O4
|
A:OEX601
|
2.0
|
26.5
|
1.0
|
|
OD2
|
A:ASP170
|
2.0
|
23.3
|
1.0
|
|
O
|
A:HOH803
|
2.0
|
26.1
|
1.0
|
|
OE2
|
A:GLU333
|
2.1
|
20.7
|
1.0
|
|
O
|
A:HOH792
|
2.2
|
22.0
|
1.0
|
|
O5
|
A:OEX601
|
2.4
|
21.7
|
1.0
|
|
MN3
|
A:OEX601
|
2.9
|
21.2
|
1.0
|
|
CD
|
A:GLU333
|
3.0
|
20.4
|
1.0
|
|
CG
|
A:ASP170
|
3.2
|
22.0
|
1.0
|
|
OE1
|
A:GLU333
|
3.3
|
20.9
|
1.0
|
|
O
|
A:HOH840
|
3.8
|
27.4
|
1.0
|
|
OD1
|
A:ASP170
|
3.8
|
25.6
|
1.0
|
|
CA1
|
A:OEX601
|
3.8
|
24.0
|
1.0
|
|
O2
|
A:OEX601
|
3.9
|
22.5
|
1.0
|
|
O
|
A:HOH789
|
3.9
|
33.0
|
1.0
|
|
O
|
A:HOH744
|
4.0
|
22.7
|
1.0
|
|
OD1
|
A:ASP61
|
4.1
|
24.5
|
1.0
|
|
O
|
A:HOH835
|
4.2
|
28.3
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
20.1
|
1.0
|
|
O
|
A:SER169
|
4.4
|
19.5
|
1.0
|
|
CB
|
A:ASP170
|
4.4
|
19.7
|
1.0
|
|
CA
|
A:ASP170
|
4.5
|
22.5
|
1.0
|
|
O3
|
A:OEX601
|
4.7
|
20.2
|
1.0
|
|
NH2
|
C:ARG357
|
4.8
|
24.4
|
1.0
|
|
O
|
A:HOH732
|
4.8
|
22.4
|
1.0
|
|
OE2
|
C:GLU354
|
4.8
|
20.5
|
1.0
|
|
C
|
A:SER169
|
4.9
|
20.0
|
1.0
|
|
MN1
|
A:OEX601
|
5.0
|
20.6
|
1.0
|
|
N
|
A:ASP170
|
5.0
|
20.0
|
1.0
|
|
Manganese binding site 5 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 5 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn402
b:24.4
occ:1.00
|
MN1
|
a:OEX402
|
0.0
|
24.4
|
1.0
|
|
O1
|
a:OEX402
|
1.9
|
23.2
|
1.0
|
|
OE2
|
a:GLU189
|
1.9
|
24.1
|
1.0
|
|
O3
|
a:OEX402
|
1.9
|
24.7
|
1.0
|
|
NE2
|
a:HIS332
|
2.1
|
25.4
|
1.0
|
|
OD2
|
a:ASP342
|
2.2
|
25.9
|
1.0
|
|
O5
|
a:OEX402
|
2.6
|
25.8
|
1.0
|
|
MN2
|
a:OEX402
|
2.8
|
23.9
|
1.0
|
|
CD
|
a:GLU189
|
2.9
|
30.8
|
1.0
|
|
CE1
|
a:HIS332
|
3.1
|
24.3
|
1.0
|
|
CG
|
a:ASP342
|
3.1
|
21.7
|
1.0
|
|
CD2
|
a:HIS332
|
3.2
|
23.5
|
1.0
|
|
MN3
|
a:OEX402
|
3.2
|
23.7
|
1.0
|
|
OD1
|
a:ASP342
|
3.3
|
25.1
|
1.0
|
|
OE1
|
a:GLU189
|
3.4
|
32.1
|
1.0
|
|
CA1
|
a:OEX402
|
3.5
|
26.4
|
1.0
|
|
O2
|
a:OEX402
|
3.6
|
26.3
|
1.0
|
|
NE2
|
a:HIS337
|
3.9
|
24.0
|
1.0
|
|
OE1
|
a:GLU333
|
4.0
|
27.1
|
1.0
|
|
O
|
a:HOH587
|
4.0
|
34.3
|
1.0
|
|
CG
|
a:GLU189
|
4.1
|
28.9
|
1.0
|
|
O
|
a:HOH662
|
4.2
|
40.7
|
1.0
|
|
ND1
|
a:HIS332
|
4.2
|
24.4
|
1.0
|
|
CG
|
a:HIS332
|
4.3
|
24.1
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
27.5
|
1.0
|
|
OE1
|
c:GLU354
|
4.5
|
23.0
|
1.0
|
|
CB
|
a:ASP342
|
4.5
|
24.1
|
1.0
|
|
CG1
|
a:VAL185
|
4.5
|
22.8
|
1.0
|
|
O
|
a:HOH649
|
4.6
|
29.6
|
1.0
|
|
OE2
|
c:GLU354
|
4.6
|
23.9
|
1.0
|
|
CE1
|
a:HIS337
|
4.6
|
24.2
|
1.0
|
|
CD
|
a:GLU333
|
4.7
|
25.9
|
1.0
|
|
O
|
a:ALA344
|
4.8
|
30.4
|
1.0
|
|
O
|
a:HOH586
|
4.8
|
28.8
|
1.0
|
|
C
|
a:ALA344
|
4.9
|
32.0
|
1.0
|
|
MN4
|
a:OEX402
|
4.9
|
27.6
|
1.0
|
|
CD
|
c:GLU354
|
4.9
|
26.6
|
1.0
|
|
O4
|
a:OEX402
|
5.0
|
26.2
|
1.0
|
|
CD2
|
a:HIS337
|
5.0
|
20.7
|
1.0
|
|
OE2
|
a:GLU333
|
5.0
|
24.1
|
1.0
|
|
Manganese binding site 6 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 6 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn402
b:23.9
occ:1.00
|
MN2
|
a:OEX402
|
0.0
|
23.9
|
1.0
|
|
OXT
|
a:ALA344
|
1.9
|
27.5
|
1.0
|
|
O1
|
a:OEX402
|
1.9
|
23.2
|
1.0
|
|
O3
|
a:OEX402
|
1.9
|
24.7
|
1.0
|
|
O2
|
a:OEX402
|
2.0
|
26.3
|
1.0
|
|
OD1
|
a:ASP342
|
2.1
|
25.1
|
1.0
|
|
OE1
|
c:GLU354
|
2.1
|
23.0
|
1.0
|
|
MN1
|
a:OEX402
|
2.8
|
24.4
|
1.0
|
|
C
|
a:ALA344
|
2.8
|
32.0
|
1.0
|
|
MN3
|
a:OEX402
|
2.9
|
23.7
|
1.0
|
|
CD
|
c:GLU354
|
3.0
|
26.6
|
1.0
|
|
CG
|
a:ASP342
|
3.0
|
21.7
|
1.0
|
|
OE2
|
c:GLU354
|
3.2
|
23.9
|
1.0
|
|
O
|
a:ALA344
|
3.2
|
30.4
|
1.0
|
|
OD2
|
a:ASP342
|
3.2
|
25.9
|
1.0
|
|
CA1
|
a:OEX402
|
3.3
|
26.4
|
1.0
|
|
O5
|
a:OEX402
|
3.7
|
25.8
|
1.0
|
|
NE2
|
a:HIS337
|
3.9
|
24.0
|
1.0
|
|
O
|
c:HOH824
|
4.0
|
29.8
|
1.0
|
|
CA
|
a:ALA344
|
4.2
|
30.3
|
1.0
|
|
O
|
a:HOH587
|
4.2
|
34.3
|
1.0
|
|
N
|
a:ALA344
|
4.3
|
31.6
|
1.0
|
|
CD2
|
a:HIS337
|
4.3
|
20.7
|
1.0
|
|
OE2
|
a:GLU189
|
4.4
|
24.1
|
1.0
|
|
CG
|
c:GLU354
|
4.4
|
27.3
|
1.0
|
|
CB
|
a:ASP342
|
4.4
|
24.1
|
1.0
|
|
O4
|
a:OEX402
|
4.5
|
26.2
|
1.0
|
|
OE1
|
a:GLU333
|
4.5
|
27.1
|
1.0
|
|
NE2
|
a:HIS332
|
4.6
|
25.4
|
1.0
|
|
NH2
|
c:ARG357
|
4.6
|
35.3
|
1.0
|
|
CA
|
a:ASP342
|
4.8
|
24.0
|
1.0
|
|
CB
|
c:GLU354
|
4.8
|
26.0
|
1.0
|
|
O
|
a:HOH586
|
4.9
|
28.8
|
1.0
|
|
C
|
a:ASP342
|
4.9
|
24.5
|
1.0
|
|
CD
|
a:GLU189
|
5.0
|
30.8
|
1.0
|
|
NH1
|
c:ARG357
|
5.0
|
35.3
|
1.0
|
|
Manganese binding site 7 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 7 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn402
b:23.7
occ:1.00
|
MN3
|
a:OEX402
|
0.0
|
23.7
|
1.0
|
|
O2
|
a:OEX402
|
1.8
|
26.3
|
1.0
|
|
O3
|
a:OEX402
|
1.9
|
24.7
|
1.0
|
|
OE1
|
a:GLU333
|
2.0
|
27.1
|
1.0
|
|
O4
|
a:OEX402
|
2.0
|
26.2
|
1.0
|
|
OE2
|
c:GLU354
|
2.1
|
23.9
|
1.0
|
|
O5
|
a:OEX402
|
2.2
|
25.8
|
1.0
|
|
MN2
|
a:OEX402
|
2.9
|
23.9
|
1.0
|
|
CD
|
a:GLU333
|
2.9
|
25.9
|
1.0
|
|
MN4
|
a:OEX402
|
3.0
|
27.6
|
1.0
|
|
CD
|
c:GLU354
|
3.1
|
26.6
|
1.0
|
|
OE2
|
a:GLU333
|
3.2
|
24.1
|
1.0
|
|
MN1
|
a:OEX402
|
3.2
|
24.4
|
1.0
|
|
OE1
|
c:GLU354
|
3.4
|
23.0
|
1.0
|
|
CA1
|
a:OEX402
|
3.5
|
26.4
|
1.0
|
|
O1
|
a:OEX402
|
3.5
|
23.2
|
1.0
|
|
NH2
|
c:ARG357
|
4.0
|
35.3
|
1.0
|
|
O
|
c:HOH744
|
4.0
|
29.9
|
1.0
|
|
OD2
|
a:ASP170
|
4.1
|
28.5
|
1.0
|
|
NE2
|
a:HIS337
|
4.2
|
24.0
|
1.0
|
|
NE2
|
a:HIS332
|
4.2
|
25.4
|
1.0
|
|
O
|
a:HOH525
|
4.3
|
26.4
|
1.0
|
|
CG
|
a:GLU333
|
4.3
|
24.9
|
1.0
|
|
OD1
|
a:ASP170
|
4.4
|
26.0
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
27.5
|
1.0
|
|
CD2
|
a:HIS332
|
4.5
|
23.5
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
27.3
|
1.0
|
|
O
|
a:HOH593
|
4.6
|
26.3
|
1.0
|
|
OD1
|
a:ASP342
|
4.6
|
25.1
|
1.0
|
|
CB
|
a:GLU333
|
4.7
|
25.2
|
1.0
|
|
CG
|
a:ASP170
|
4.7
|
23.6
|
1.0
|
|
O
|
a:HOH616
|
4.7
|
30.1
|
1.0
|
|
O
|
a:ALA344
|
4.8
|
30.4
|
1.0
|
|
CE1
|
a:HIS337
|
4.8
|
24.2
|
1.0
|
|
OD2
|
a:ASP342
|
4.9
|
25.9
|
1.0
|
|
O
|
a:HOH649
|
4.9
|
29.6
|
1.0
|
|
OE2
|
a:GLU189
|
4.9
|
24.1
|
1.0
|
|
Manganese binding site 8 out
of 8 in 5v2c
Go back to
Manganese Binding Sites List in 5v2c
Manganese binding site 8 out
of 8 in the Re-Refinement of Crystal Structure of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Re-Refinement of Crystal Structure of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn402
b:27.6
occ:1.00
|
MN4
|
a:OEX402
|
0.0
|
27.6
|
1.0
|
|
O4
|
a:OEX402
|
2.0
|
26.2
|
1.0
|
|
OD2
|
a:ASP170
|
2.0
|
28.5
|
1.0
|
|
OE2
|
a:GLU333
|
2.1
|
24.1
|
1.0
|
|
O
|
a:HOH616
|
2.1
|
30.1
|
1.0
|
|
O
|
a:HOH593
|
2.2
|
26.3
|
1.0
|
|
O5
|
a:OEX402
|
2.4
|
25.8
|
1.0
|
|
MN3
|
a:OEX402
|
3.0
|
23.7
|
1.0
|
|
CD
|
a:GLU333
|
3.0
|
25.9
|
1.0
|
|
CG
|
a:ASP170
|
3.1
|
23.6
|
1.0
|
|
OE1
|
a:GLU333
|
3.2
|
27.1
|
1.0
|
|
OD1
|
a:ASP170
|
3.7
|
26.0
|
1.0
|
|
O
|
a:HOH649
|
3.7
|
29.6
|
1.0
|
|
CA1
|
a:OEX402
|
3.8
|
26.4
|
1.0
|
|
O2
|
a:OEX402
|
3.9
|
26.3
|
1.0
|
|
O
|
a:HOH525
|
4.0
|
26.4
|
1.0
|
|
O
|
a:HOH545
|
4.1
|
28.5
|
1.0
|
|
OD1
|
a:ASP61
|
4.2
|
28.1
|
1.0
|
|
O
|
a:HOH606
|
4.2
|
28.6
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
24.9
|
1.0
|
|
CB
|
a:ASP170
|
4.4
|
24.4
|
1.0
|
|
O
|
a:SER169
|
4.4
|
22.6
|
1.0
|
|
CA
|
a:ASP170
|
4.5
|
23.9
|
1.0
|
|
O3
|
a:OEX402
|
4.6
|
24.7
|
1.0
|
|
O
|
a:HOH523
|
4.7
|
24.5
|
1.0
|
|
NH2
|
c:ARG357
|
4.8
|
35.3
|
1.0
|
|
OE2
|
c:GLU354
|
4.8
|
23.9
|
1.0
|
|
C
|
a:SER169
|
4.9
|
20.6
|
1.0
|
|
MN1
|
a:OEX402
|
4.9
|
24.4
|
1.0
|
|
N
|
a:ASP170
|
5.0
|
19.5
|
1.0
|
|
Reference:
J.M.Wiwczar,
A.M.Lafountain,
J.Wang,
H.A.Frank,
G.W.Brudvig.
Chlorophyll A with A Farnesyl Tail in Thermophilic Cyanobacteria. Photosyn. Res. V. 134 175 2017.
ISSN: ISSN 1573-5079
PubMed: 28741056
DOI: 10.1007/S11120-017-0425-4
Page generated: Tue Dec 15 04:47:36 2020
|
