Manganese in PDB 5uyh: Yfea with Metal Bound to Site 2 - Mn Wavelength

The structure of Yfea with Metal Bound to Site 2 - Mn Wavelength, PDB code: 5uyh was solved by C.D.Radka, L.J.Delucas, S.G.Aller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.00 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.385, 66.100, 66.829, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.5

The binding sites of Manganese atom in the Yfea with Metal Bound to Site 2 - Mn Wavelength (pdb code 5uyh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Yfea with Metal Bound to Site 2 - Mn Wavelength, PDB code: 5uyh:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Yfea with Metal Bound to Site 2 - Mn Wavelength


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Yfea with Metal Bound to Site 2 - Mn Wavelength within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:22.9 occ:1.00 OE1 A:GLU207 2.1 26.4 1.0 NE2 A:HIS76 2.1 24.8 1.0 NE2 A:HIS141 2.2 27.2 1.0 OD2 A:ASP282 2.2 29.7 1.0 OE2 A:GLU207 2.6 25.3 1.0 OD1 A:ASP282 2.6 25.9 1.0 CD A:GLU207 2.6 27.7 1.0 CG A:ASP282 2.7 31.2 1.0 CE1 A:HIS76 3.0 27.3 1.0 CD2 A:HIS141 3.1 22.6 1.0 CD2 A:HIS76 3.1 28.0 1.0 CE1 A:HIS141 3.1 23.6 1.0 ND2 A:ASN228 3.8 31.6 1.0 ND1 A:HIS76 4.1 24.1 1.0 CG A:GLU207 4.1 30.7 1.0 CG A:ASN228 4.2 29.1 1.0 CG A:HIS76 4.2 27.9 1.0 CB A:ASP282 4.2 25.6 1.0 O A:HOH545 4.2 34.0 1.0 ND1 A:HIS141 4.3 26.6 1.0 CG A:HIS141 4.3 24.7 1.0 CB A:ALA209 4.4 25.1 1.0 O A:HOH535 4.5 29.3 1.0 OD1 A:ASN228 4.6 27.6 1.0 CB A:ASN228 4.8 26.6 1.0 CD1 A:LEU101 4.9 26.3 1.0

Manganese binding site 2 out of 2 in the Yfea with Metal Bound to Site 2 - Mn Wavelength


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Yfea with Metal Bound to Site 2 - Mn Wavelength within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:40.2 occ:1.00 NE2 A:HIS163 1.9 35.3 1.0 O A:HOH627 2.2 31.0 1.0 O A:HOH639 2.3 56.2 1.0 CE1 A:HIS163 2.7 34.7 1.0 O A:HOH659 2.9 51.7 1.0 CD2 A:HIS163 3.0 39.3 1.0 ND1 A:HIS163 3.9 35.0 1.0 CG A:HIS163 4.1 38.8 1.0 O A:HOH658 4.5 48.2 1.0 CB A:PRO116 4.6 32.7 1.0 CB A:GLU162 4.9 45.1 1.0

C.D.Radka, L.J.Delucas, L.S.Wilson, M.B.Lawrenz, R.D.Perry, S.G.Aller. Crystal Structure of Yersinia Pestis Virulence Factor Yfea Reveals Two Polyspecific Metal-Binding Sites. Acta Crystallogr D Struct V. 73 557 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28695856
DOI: 10.1107/S2059798317006349