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Manganese in PDB 5ry8: INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753

Enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753

All present enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753:
3.1.3.36; 3.1.3.56; 3.1.3.86;

Protein crystallography data

The structure of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753, PDB code: 5ry8 was solved by W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.18 / 1.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.410, 79.120, 89.180, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.6

Other elements in 5ry8:

The structure of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753 (pdb code 5ry8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753, PDB code: 5ry8:

Manganese binding site 1 out of 1 in 5ry8

Go back to Manganese Binding Sites List in 5ry8
Manganese binding site 1 out of 1 in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z1374778753 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn907

b:14.6
occ:0.99
 NE2 A:HIS839 1.9 9.5 0.5
N A:BTB902 2.0 19.7 1.0
O3 A:BTB902 2.1 18.8 1.0
O8 A:BTB902 2.2 24.2 1.0
O6 A:BTB902 2.3 18.9 1.0
O4 A:BTB902 2.6 18.5 1.0
C8 A:BTB902 2.7 21.5 1.0
C7 A:BTB902 2.8 21.3 1.0
C5 A:BTB902 2.8 20.0 1.0
C2 A:BTB902 2.8 19.6 1.0
CD2 A:HIS839 2.8 9.9 0.5
C3 A:BTB902 2.9 19.3 1.0
C6 A:BTB902 3.0 19.6 1.0
CE1 A:HIS839 3.0 9.7 0.5
C4 A:BTB902 3.2 18.9 1.0
O2 A:PO4906 4.0 29.4 1.0
O1 A:PO4906 4.0 28.6 1.0
CG A:HIS839 4.0 10.0 0.5
O A:HOH1132 4.0 15.7 1.0
ND1 A:HIS839 4.1 9.5 0.5
O A:HOH1159 4.1 13.3 1.0
C1 A:BTB902 4.3 20.1 1.0
CG A:ARG560 4.3 10.9 0.5
CE1 A:HIS838 4.6 10.9 0.5
O A:ARG560 4.6 11.7 0.5
P A:PO4906 4.6 29.0 1.0
NE A:ARG560 4.7 11.9 0.5
NE2 A:HIS838 4.9 11.1 0.5
O1 A:BTB902 4.9 20.1 1.0
CD A:ARG560 5.0 11.4 0.5

Reference:

W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. INPP5D Pandda Analysis Group Deposition To Be Published.
Page generated: Sun Oct 6 02:52:50 2024

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