Manganese in PDB 5mn0: Aba Receptor From Citrus, CSPYL1

All present enzymatic activity of Aba Receptor From Citrus, CSPYL1:
3.1.3.16;

The structure of Aba Receptor From Citrus, CSPYL1, PDB code: 5mn0 was solved by M.Moreno-Alvero, C.Yunta, M.Gonzalez-Guzman, V.Arbona, A.Granell, M.Martinez-Ripoll, L.Infantes, P.L.Rodriguez, A.Albert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.98 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.778, 62.679, 187.917, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 24.6

The structure of Aba Receptor From Citrus, CSPYL1 also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

The binding sites of Manganese atom in the Aba Receptor From Citrus, CSPYL1 (pdb code 5mn0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Aba Receptor From Citrus, CSPYL1, PDB code: 5mn0:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in the Aba Receptor From Citrus, CSPYL1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aba Receptor From Citrus, CSPYL1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn602 b:1.0 occ:1.00 O B:GLY401 2.5 48.7 1.0 OD1 B:ASP298 2.9 68.3 1.0 OE2 B:GLU302 3.2 97.7 1.0 OD2 B:ASP298 3.5 75.9 1.0 CG B:ASP298 3.5 61.9 1.0 C B:GLY401 3.6 39.9 1.0 N B:GLY401 4.0 41.1 1.0 O B:SER399 4.0 40.3 1.0 CD B:PRO411 4.1 43.0 1.0 O B:VAL409 4.2 50.2 1.0 CA B:GLY401 4.2 44.8 1.0 CG B:PRO411 4.4 55.4 1.0 CD B:GLU302 4.4 0.9 1.0 C B:ASP402 4.5 46.3 1.0 N B:ARG403 4.5 47.7 1.0 N B:PRO411 4.6 43.2 1.0 CB B:PRO411 4.6 47.1 1.0 O B:ASP402 4.6 40.1 1.0 N B:ASP402 4.7 41.0 1.0 C B:ILE400 4.7 48.5 1.0 C B:ILE410 4.8 44.4 1.0 CB B:LYS406 4.9 61.9 1.0 CA B:ARG403 4.9 47.4 1.0 CB B:ASP298 4.9 51.6 1.0 CA B:ASP402 5.0 43.0 1.0 CA B:ILE410 5.0 44.2 1.0 C B:SER399 5.0 45.0 1.0 CB B:ASP402 5.0 46.7 1.0

Manganese binding site 2 out of 3 in the Aba Receptor From Citrus, CSPYL1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Aba Receptor From Citrus, CSPYL1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn603 b:53.9 occ:1.00 O B:GLY244 2.1 36.1 1.0 OD1 B:ASP243 2.1 37.4 1.0 O B:HOH767 2.3 60.7 1.0 O B:HOH715 2.3 37.8 1.0 O B:HOH773 2.4 46.4 1.0 O B:HOH707 2.5 42.1 1.0 CG B:ASP243 3.2 39.2 1.0 C B:GLY244 3.3 46.2 1.0 OD2 B:ASP243 3.7 35.0 1.0 MN B:MN604 3.8 40.2 1.0 N B:GLY244 4.0 34.8 1.0 C B:ASP243 4.1 30.8 1.0 O B:HOH739 4.2 38.3 1.0 CA B:GLY244 4.2 35.6 1.0 N B:HIS245 4.3 38.6 1.0 CB B:GLU203 4.4 30.4 1.0 CA B:HIS245 4.4 43.6 1.0 O B:HOH708 4.4 41.8 1.0 OE1 B:GLU203 4.4 49.0 1.0 OD1 B:ASN493 4.4 38.4 1.0 OD1 B:ASP204 4.5 35.8 1.0 O B:ASP243 4.5 42.8 1.0 CB B:ASP243 4.5 32.7 1.0 O B:HOH751 4.6 39.0 1.0 CB B:HIS245 4.6 33.7 1.0 CA B:ASP243 4.6 28.1 1.0 O B:HOH735 4.6 46.4 1.0 OD1 B:ASP492 4.6 34.0 1.0 O B:GLU203 4.8 39.2 1.0 NH2 B:ARG199 4.8 41.1 1.0 C B:GLU203 4.9 46.9 1.0 O B:HOH737 5.0 46.6 1.0

Manganese binding site 3 out of 3 in the Aba Receptor From Citrus, CSPYL1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Aba Receptor From Citrus, CSPYL1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn604 b:40.2 occ:1.00 OD2 B:ASP243 2.0 35.0 1.0 O B:HOH707 2.1 42.1 1.0 OD1 B:ASP432 2.1 54.2 1.0 OD2 B:ASP492 2.1 37.0 1.0 O B:HOH735 2.2 46.4 1.0 O B:HOH708 2.3 41.8 1.0 CG B:ASP243 3.0 39.2 1.0 CG B:ASP432 3.1 42.3 1.0 CG B:ASP492 3.1 40.0 1.0 OD1 B:ASP243 3.4 37.4 1.0 OD2 B:ASP432 3.5 55.7 1.0 OD1 B:ASP492 3.5 34.0 1.0 MN B:MN603 3.8 53.9 1.0 O B:HOH737 3.9 46.6 1.0 O B:HOH767 4.2 60.7 1.0 N B:GLY433 4.2 30.2 1.0 O B:HOH716 4.3 33.7 1.0 CB B:ASP243 4.4 32.7 1.0 CB B:ASP492 4.4 37.4 1.0 N B:ASP432 4.5 38.3 1.0 CB B:ASP432 4.5 32.1 1.0 O B:HOH715 4.5 37.8 1.0 O B:ASN493 4.5 34.3 1.0 OD1 B:ASP204 4.6 35.8 1.0 C B:ASP432 4.7 27.6 1.0 CB B:SER431 4.7 34.9 1.0 CA B:ASP432 4.8 25.1 1.0 CA B:GLY433 4.9 33.8 1.0 OG B:SER431 5.0 37.0 1.0

M.Moreno-Alvero, C.Yunta, M.Gonzalez-Guzman, J.Lozano-Juste, J.L.Benavente, V.Arbona, M.Menendez, M.Martinez-Ripoll, L.Infantes, A.Gomez-Cadenas, P.L.Rodriguez, A.Albert. Structure of Ligand-Bound Intermediates of Crop Aba Receptors Highlights PP2C As Necessary Aba Co-Receptor. Mol Plant V. 10 1250 2017.
ISSN: ESSN 1752-9867
PubMed: 28736053
DOI: 10.1016/J.MOLP.2017.07.004