Manganese in PDB 5mfu: PA3825-Eal Mn-Pgpg Structure

The structure of PA3825-Eal Mn-Pgpg Structure, PDB code: 5mfu was solved by S.Horrell, D.Bellini, R.Strange, A.Wagner, M.Walsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.66 / 2.15
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	64.780, 64.780, 135.787, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 26.1

The structure of PA3825-Eal Mn-Pgpg Structure also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Manganese atom in the PA3825-Eal Mn-Pgpg Structure (pdb code 5mfu). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the PA3825-Eal Mn-Pgpg Structure, PDB code: 5mfu:

Manganese binding site 1 out of 1 in the PA3825-Eal Mn-Pgpg Structure


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of PA3825-Eal Mn-Pgpg Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:47.3 occ:1.00 OE1 A:GLU130 2.1 40.5 1.0 OE2 A:GLU39 2.2 27.1 1.0 OD2 A:ASP160 2.2 39.1 1.0 OP1 A:G503 2.2 60.1 1.0 OD1 A:ASN98 2.5 18.2 1.0 O A:HOH626 2.8 42.4 1.0 CG A:ASP160 3.0 43.2 1.0 CD A:GLU39 3.2 24.5 1.0 P A:G503 3.2 69.7 1.0 OD1 A:ASP160 3.3 50.7 1.0 CD A:GLU130 3.3 32.3 1.0 CG A:ASN98 3.3 17.6 1.0 OP3 A:G503 3.4 59.3 1.0 OE1 A:GLU39 3.5 27.1 1.0 ND2 A:ASN98 3.5 20.0 1.0 O2' A:G504 3.7 25.0 1.0 NA A:NA502 3.7 35.3 1.0 OE2 A:GLU130 3.9 36.2 1.0 O A:HOH609 3.9 38.6 1.0 OP2 A:G503 3.9 57.5 1.0 CB A:ASP160 4.3 40.7 1.0 CB A:GLU130 4.4 22.4 1.0 CG A:GLU130 4.4 26.4 1.0 CG A:GLU39 4.5 21.6 1.0 O5' A:G503 4.6 61.8 1.0 CB A:ASN98 4.8 16.8 1.0 NZ A:LYS181 4.9 34.0 1.0 C2' A:G504 4.9 24.4 1.0 C5' A:G503 5.0 47.7 1.0

D.Bellini, S.Horrell, A.Hutchin, C.W.Phippen, R.W.Strange, Y.Cai, A.Wagner, J.S.Webb, I.Tews, M.A.Walsh. Dimerisation Induced Formation of the Active Site and the Identification of Three Metal Sites in Eal-Phosphodiesterases. Sci Rep V. 7 42166 2017.
ISSN: ESSN 2045-2322
PubMed: 28186120
DOI: 10.1038/SREP42166