Manganese in PDB 5m95: Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese

The structure of Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese, PDB code: 5m95 was solved by I.A.Ehrnstorfer, E.R.Geertsma, E.Pardon, J.Steyaert, R.Dutzler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.90 / 3.40
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.170, 114.170, 257.530, 90.00, 90.00, 120.00
R / Rfree (%)	25.2 / 29.2

The binding sites of Manganese atom in the Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese (pdb code 5m95). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese, PDB code: 5m95:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:0.3 occ:1.00 O A:ALA223 2.1 0.2 1.0 OD2 A:ASP49 2.3 0.0 1.0 SD A:MET226 2.7 0.1 1.0 OD1 A:ASN52 2.9 0.6 1.0 C A:ALA223 3.2 0.7 1.0 CG A:ASP49 3.3 0.6 1.0 CE A:MET226 3.3 0.4 1.0 CG A:MET226 3.4 95.6 1.0 CG A:ASN52 3.4 0.9 1.0 ND2 A:ASN52 3.5 0.1 1.0 CA A:ALA223 3.7 0.2 1.0 CB A:ALA223 4.0 0.6 1.0 CB A:ASP49 4.0 0.1 1.0 OD1 A:ASP49 4.3 0.5 1.0 N A:THR224 4.3 99.3 1.0 OE1 A:GLN389 4.5 0.5 1.0 CB A:ASN52 4.7 0.4 1.0 N A:ASN52 4.7 0.5 1.0 CA A:THR224 4.8 0.3 1.0 CB A:MET226 4.8 0.2 1.0

Manganese binding site 2 out of 2 in the Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Staphylococcus Capitis Divalent Metal Ion Transporter (Dmt) in Complex with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn501 b:0.0 occ:1.00 O C:ALA223 2.7 0.9 1.0 ND2 C:ASN52 2.7 0.9 1.0 OD2 C:ASP49 2.9 0.5 1.0 SD C:MET226 3.0 0.9 1.0 CG C:ASN52 3.5 0.1 1.0 CG C:ASP49 3.6 0.4 1.0 OD1 C:ASN52 3.7 0.9 1.0 CB C:ASP49 3.7 1.0 1.0 CG C:MET226 3.8 0.7 1.0 CA C:GLY46 3.9 0.6 1.0 C C:ALA223 3.9 0.7 1.0 N C:GLY46 4.2 0.5 1.0 CE C:MET226 4.3 0.7 1.0 C C:GLY46 4.6 0.4 1.0 O C:GLY46 4.6 0.2 1.0 OD1 C:ASP49 4.7 0.1 1.0 C C:VAL45 4.7 0.4 1.0 CA C:ALA223 4.7 0.9 1.0 N C:THR224 4.8 0.0 1.0 CA C:THR224 4.8 0.4 1.0 CB C:ASN52 4.8 0.3 1.0 O C:VAL45 4.9 0.3 1.0

I.A.Ehrnstorfer, E.R.Geertsma, E.Pardon, J.Steyaert, R.Dutzler. Crystal Structure of A SLC11 (Nramp) Transporter Reveals the Basis For Transition-Metal Ion Transport. Nat.Struct.Mol.Biol. V. 21 990 2014.
ISSN: ESSN 1545-9985
PubMed: 25326704
DOI: 10.1038/NSMB.2904