Manganese in PDB 5lhk: Bottromycin Maturation Enzyme Botp in Complex with Mn

All present enzymatic activity of Bottromycin Maturation Enzyme Botp in Complex with Mn:
3.4.11.1;

The structure of Bottromycin Maturation Enzyme Botp in Complex with Mn, PDB code: 5lhk was solved by J.Koehnke, S.Adam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.21 / 2.32
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	151.510, 151.510, 101.190, 90.00, 90.00, 120.00
R / Rfree (%)	14.7 / 19

The binding sites of Manganese atom in the Bottromycin Maturation Enzyme Botp in Complex with Mn (pdb code 5lhk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Bottromycin Maturation Enzyme Botp in Complex with Mn, PDB code: 5lhk:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Bottromycin Maturation Enzyme Botp in Complex with Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Bottromycin Maturation Enzyme Botp in Complex with Mn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn601 b:18.6 occ:1.00 OD2 A:ASP284 2.0 20.4 1.0 OE2 A:GLU345 2.1 19.4 1.0 O A:HOH734 2.2 20.2 1.0 OD2 A:ASP266 2.4 19.3 1.0 NZ A:LYS261 2.4 18.3 1.0 CG A:ASP284 2.8 19.8 1.0 O A:HOH868 3.0 40.1 1.0 OD1 A:ASP284 3.0 21.5 1.0 CD A:GLU345 3.0 19.3 1.0 MN A:MN602 3.1 28.0 1.0 CE A:LYS261 3.2 19.4 1.0 OE1 A:GLU345 3.3 19.3 1.0 CG A:ASP266 3.3 17.7 1.0 O2 A:BCT603 3.7 21.0 1.0 CB A:ASP266 3.9 17.2 1.0 O A:HOH924 4.0 39.4 1.0 OD1 A:ASP266 4.2 16.6 1.0 O A:THR373 4.2 19.7 1.0 CB A:ASP284 4.2 18.1 1.0 O A:HOH939 4.3 32.7 1.0 CG A:GLU345 4.4 19.5 1.0 N A:GLY346 4.6 19.3 1.0 CD A:LYS261 4.6 20.2 1.0 O A:ASP343 4.7 20.2 1.0 CB A:VAL263 4.8 19.9 1.0 CG2 A:VAL263 4.8 21.4 1.0 CG1 A:VAL263 4.8 22.5 1.0 C A:BCT603 4.9 22.9 1.0 CA A:GLY346 4.9 18.2 1.0

Manganese binding site 2 out of 2 in the Bottromycin Maturation Enzyme Botp in Complex with Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Bottromycin Maturation Enzyme Botp in Complex with Mn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn602 b:28.0 occ:1.00 O A:ASP343 2.1 20.2 1.0 OD2 A:ASP266 2.2 19.3 1.0 OD1 A:ASP343 2.2 18.1 1.0 OE1 A:GLU345 2.2 19.3 1.0 O A:HOH734 2.3 20.2 1.0 O A:HOH939 2.6 32.7 1.0 CG A:ASP266 3.0 17.7 1.0 MN A:MN601 3.1 18.6 1.0 C A:ASP343 3.1 18.9 1.0 CG A:ASP343 3.1 17.7 1.0 CD A:GLU345 3.2 19.3 1.0 OD1 A:ASP266 3.2 16.6 1.0 OE2 A:GLU345 3.5 19.4 1.0 CA A:ASP343 3.6 18.6 1.0 CB A:ASP343 3.9 17.6 1.0 OD2 A:ASP343 4.0 18.0 1.0 NZ A:LYS273 4.0 21.1 1.0 O A:HOH924 4.1 39.4 1.0 O A:HOH868 4.1 40.1 1.0 O2 A:BCT603 4.2 21.0 1.0 N A:ASN344 4.3 18.4 1.0 N A:GLU345 4.4 20.0 1.0 O A:HOH958 4.4 45.8 1.0 CE A:LYS273 4.4 21.9 1.0 CB A:ASP266 4.4 17.2 1.0 CG A:GLU345 4.6 19.5 1.0 ND2 A:ASN316 4.6 20.8 1.0 OD2 A:ASP284 4.6 20.4 1.0 CA A:ASN344 4.7 19.8 1.0 N A:ASP343 5.0 18.4 1.0

G.Mann, L.Huo, S.Adam, B.Nardone, J.Vendome, N.J.Westwood, R.Muller, J.Koehnke. Structure and Substrate Recognition of the Bottromycin Maturation Enzyme Botp. Chembiochem V. 17 2286 2016.
ISSN: ESSN 1439-7633
PubMed: 27653442
DOI: 10.1002/CBIC.201600406