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Manganese in PDB 5jz6: Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate

Enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate

All present enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate:
1.14.11.16;

Protein crystallography data

The structure of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate, PDB code: 5jz6 was solved by M.A.Mcdonough, I.Pfeffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.15 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.019, 70.641, 172.541, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate (pdb code 5jz6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate, PDB code: 5jz6:

Manganese binding site 1 out of 1 in 5jz6

Go back to Manganese Binding Sites List in 5jz6
Manganese binding site 1 out of 1 in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese and L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn801

b:36.9
occ:1.00
 O A:HOH1012 1.9 23.2 1.0
O A:HOH977 2.2 22.3 1.0
NE2 A:HIS725 2.2 24.0 1.0
O1A A:LMR806 2.2 35.9 1.0
O1B A:LMR806 2.2 42.2 1.0
NE2 A:HIS679 2.3 25.7 1.0
C1 A:LMR806 2.6 35.3 1.0
CE1 A:HIS679 3.1 24.6 1.0
CD2 A:HIS725 3.2 24.4 1.0
CE1 A:HIS725 3.2 24.0 1.0
CD2 A:HIS679 3.3 24.7 1.0
NH1 A:ARG688 4.1 30.7 1.0
C2 A:LMR806 4.1 39.7 1.0
ND1 A:HIS679 4.2 24.9 1.0
ND1 A:HIS725 4.3 24.2 1.0
CG A:HIS725 4.3 24.4 1.0
CG A:HIS679 4.4 25.0 1.0
O1 A:GOL802 4.5 57.3 1.0
OD2 A:ASP721 4.7 32.0 1.0
O2 A:LMR806 4.7 41.3 1.0
C3 A:LMR806 4.8 34.9 1.0

Reference:

I.Pfeffer, L.Brewitz, T.Krojer, S.A.Jensen, G.T.Kochan, N.J.Kershaw, K.S.Hewitson, L.A.Mcneill, H.Kramer, M.Munzel, R.J.Hopkinson, U.Oppermann, P.A.Handford, M.A.Mcdonough, C.J.Schofield. Aspartate/Asparagine-Beta-Hydroxylase Crystal Structures Reveal An Unexpected Epidermal Growth Factor-Like Domain Substrate Disulfide Pattern. Nat Commun V. 10 4910 2019.
ISSN: ESSN 2041-1723
PubMed: 31659163
DOI: 10.1038/S41467-019-12711-7
Page generated: Tue Dec 15 04:42:36 2020

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