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Manganese in PDB 5jtc: Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER)

Enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER)

All present enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER):
1.14.11.16; 3.4.21.6;

Protein crystallography data

The structure of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER), PDB code: 5jtc was solved by M.A.Mcdonough, I.Pfeffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.51 / 2.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.020, 91.660, 123.050, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.9

Other elements in 5jtc:

The structure of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER) also contains other interesting chemical elements:

Bromine (Br) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER) (pdb code 5jtc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER), PDB code: 5jtc:

Manganese binding site 1 out of 1 in 5jtc

Go back to Manganese Binding Sites List in 5jtc
Manganese binding site 1 out of 1 in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Manganese, 2,4-Pyridine Dicarboxylate and Factor X Substrate Peptide Fragment(39MER-4SER) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn801

b:26.2
occ:1.00
 NE2 A:HIS725 2.2 38.1 1.0
O22 A:PD2802 2.2 29.0 1.0
O B:HOH203 2.2 24.6 1.0
NE2 A:HIS679 2.3 29.8 1.0
N1 A:PD2802 2.4 26.8 1.0
OD2 B:ASP103 2.7 42.2 1.0
C21 A:PD2802 3.0 27.9 1.0
C2 A:PD2802 3.0 26.7 1.0
CE1 A:HIS725 3.1 36.0 1.0
CD2 A:HIS725 3.2 34.7 1.0
CE1 A:HIS679 3.2 31.2 1.0
CD2 A:HIS679 3.3 31.0 1.0
C6 A:PD2802 3.4 26.5 1.0
CG B:ASP103 3.6 42.1 1.0
O21 A:PD2802 4.2 27.8 1.0
CB B:ASP103 4.2 40.1 1.0
NH1 A:ARG688 4.2 39.3 1.0
ND1 A:HIS725 4.3 36.8 1.0
CG A:HIS725 4.3 35.8 1.0
ND1 A:HIS679 4.3 31.7 1.0
O B:ASP103 4.3 43.5 1.0
C3 A:PD2802 4.4 25.9 1.0
OD1 B:ASP103 4.4 43.2 1.0
CG A:HIS679 4.4 30.9 1.0
OD2 A:ASP721 4.5 33.5 1.0
C5 A:PD2802 4.6 27.7 1.0
CB A:ASP721 4.8 32.9 1.0
CA B:ASP103 4.8 38.4 1.0
O B:HOH206 4.8 37.7 1.0
C B:ASP103 5.0 39.6 1.0

Reference:

I.Pfeffer, T.Krojer, G.Kochan, N.Kershaw, K.Hewitson, L.Mcneill, H.Kramer, S.Jensen, P.Taylor, P.Handford, U.Oppermann, C.J.Schofield, M.A.Mcdonough. Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase and Tpr Domains in Complex with Factor X Substrate Peptide Fragment(39MER-4SER) To Be Published.
Page generated: Sun Oct 6 01:34:39 2024

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