Manganese in PDB 5hri: The Crystal Structure of Asfvpolx:DNA1 Binary Complex

The structure of The Crystal Structure of Asfvpolx:DNA1 Binary Complex, PDB code: 5hri was solved by Y.Q.Chen, J.Zhang, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.36 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	124.770, 71.273, 86.922, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 25.5

The binding sites of Manganese atom in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex (pdb code 5hri). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex, PDB code: 5hri:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Asfvpolx:DNA1 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn202 b:58.6 occ:1.00 OD1 A:ASP49 2.0 51.5 1.0 O2B A:DGT201 2.0 53.0 1.0 O2G A:DGT201 2.0 53.8 1.0 OD2 A:ASP51 2.0 47.2 1.0 O2A A:DGT201 2.1 44.8 1.0 O A:HOH301 2.2 53.8 1.0 CG A:ASP49 3.0 53.0 1.0 MN A:MN203 3.1 50.7 0.2 CG A:ASP51 3.1 46.4 1.0 PB A:DGT201 3.2 44.4 1.0 PA A:DGT201 3.2 37.4 1.0 OD2 A:ASP49 3.3 58.3 1.0 PG A:DGT201 3.3 43.5 1.0 O3A A:DGT201 3.4 40.4 1.0 OD1 A:ASP51 3.6 49.9 1.0 O3B A:DGT201 3.7 44.2 1.0 OG A:SER39 3.9 46.5 1.0 O A:HOH309 3.9 66.0 1.0 O3G A:DGT201 4.0 47.0 1.0 C5' A:DGT201 4.1 35.9 1.0 O A:ASP49 4.2 53.4 1.0 O A:HOH310 4.2 63.1 1.0 O5' A:DGT201 4.2 37.6 1.0 CB A:ASP49 4.3 50.2 1.0 CB A:ASP51 4.4 46.1 1.0 C A:ASP49 4.4 50.2 1.0 O1A A:DGT201 4.5 36.6 1.0 N A:ASP49 4.5 50.5 1.0 N A:SER39 4.5 44.5 1.0 O1B A:DGT201 4.5 39.6 1.0 O1G A:DGT201 4.6 40.7 1.0 OD2 A:ASP100 4.6 52.0 1.0 CA A:ASP49 4.7 49.8 1.0 CA A:GLY38 4.9 44.0 1.0 CB A:SER39 4.9 44.0 1.0

Manganese binding site 2 out of 4 in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Asfvpolx:DNA1 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:50.7 occ:0.20 OD1 A:ASP51 2.0 49.9 1.0 OD2 A:ASP100 2.0 52.0 1.0 O2A A:DGT201 2.1 44.8 1.0 CG A:ASP51 2.8 46.4 1.0 OD2 A:ASP51 2.9 47.2 1.0 OD1 A:ASP49 3.0 51.5 1.0 OD2 A:ASP49 3.1 58.3 1.0 MN A:MN202 3.1 58.6 1.0 CG A:ASP100 3.2 50.2 1.0 CG A:ASP49 3.3 53.0 1.0 PA A:DGT201 3.3 37.4 1.0 C5' A:DGT201 3.7 35.9 1.0 O5' A:DGT201 3.8 37.6 1.0 C3' D:DA9 3.8 51.8 1.0 C5' D:DA9 3.8 48.1 1.0 CB A:ASP100 3.8 52.6 1.0 C4' D:DA9 4.0 50.9 1.0 O A:HOH309 4.0 66.0 1.0 O1A A:DGT201 4.2 36.6 1.0 OD1 A:ASP100 4.2 55.6 1.0 CB A:ASP51 4.3 46.1 1.0 O2G A:DGT201 4.5 53.8 1.0 CZ A:PHE102 4.5 46.4 1.0 O2B A:DGT201 4.5 53.0 1.0 O5' D:DA9 4.6 54.5 1.0 CB A:ASP49 4.6 50.2 1.0 O3A A:DGT201 4.7 40.4 1.0 CE2 A:PHE102 4.8 46.9 1.0 O A:HOH301 4.9 53.8 1.0 CA A:ASP51 5.0 47.7 1.0

Manganese binding site 3 out of 4 in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of The Crystal Structure of Asfvpolx:DNA1 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn202 b:60.3 occ:1.00 O1B B:DGT201 2.0 55.8 1.0 OD2 B:ASP51 2.0 47.6 1.0 OD1 B:ASP49 2.0 53.9 1.0 O1G B:DGT201 2.0 51.4 1.0 O1A B:DGT201 2.1 44.0 1.0 O B:HOH304 2.2 53.4 1.0 MN B:MN203 2.9 45.9 0.2 CG B:ASP49 2.9 53.3 1.0 PB B:DGT201 3.1 46.6 1.0 CG B:ASP51 3.1 42.6 1.0 PA B:DGT201 3.2 35.3 1.0 OD2 B:ASP49 3.3 54.4 1.0 PG B:DGT201 3.3 45.9 1.0 O3A B:DGT201 3.4 37.4 1.0 O3B B:DGT201 3.6 43.6 1.0 OD1 B:ASP51 3.6 47.8 1.0 O2G B:DGT201 3.9 50.8 1.0 OG B:SER39 3.9 39.3 1.0 C5' B:DGT201 4.0 32.5 1.0 O B:HOH328 4.1 63.7 1.0 O5' B:DGT201 4.1 34.5 1.0 O B:ASP49 4.2 38.5 1.0 CB B:ASP49 4.3 49.5 1.0 CB B:ASP51 4.4 42.7 1.0 C B:ASP49 4.4 39.2 1.0 N B:SER39 4.5 36.7 1.0 O3G B:DGT201 4.5 49.7 1.0 O2B B:DGT201 4.5 42.4 1.0 O2A B:DGT201 4.5 32.1 1.0 N B:ASP49 4.5 50.0 1.0 OD2 B:ASP100 4.6 56.0 1.0 CA B:ASP49 4.7 46.8 1.0 CA B:GLY38 4.8 35.2 1.0 CB B:SER39 4.9 38.5 1.0

Manganese binding site 4 out of 4 in the The Crystal Structure of Asfvpolx:DNA1 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of The Crystal Structure of Asfvpolx:DNA1 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn203 b:45.9 occ:0.20 OD2 B:ASP100 2.0 56.0 1.0 O1A B:DGT201 2.0 44.0 1.0 OD1 B:ASP51 2.0 47.8 1.0 CG B:ASP51 2.8 42.6 1.0 OD1 B:ASP49 2.8 53.9 1.0 OD2 B:ASP51 2.8 47.6 1.0 MN B:MN202 2.9 60.3 1.0 OD2 B:ASP49 3.0 54.4 1.0 CG B:ASP49 3.1 53.3 1.0 CG B:ASP100 3.2 47.8 1.0 PA B:DGT201 3.3 35.3 1.0 C5' B:DGT201 3.7 32.5 1.0 CB B:ASP100 3.8 43.9 1.0 O5' B:DGT201 3.8 34.5 1.0 C3' G:DA9 3.9 44.4 1.0 C5' G:DA9 3.9 47.7 1.0 C4' G:DA9 4.1 47.2 1.0 OD1 B:ASP100 4.2 46.2 1.0 O2A B:DGT201 4.2 32.1 1.0 CB B:ASP51 4.2 42.7 1.0 O1G B:DGT201 4.2 51.4 1.0 O1B B:DGT201 4.4 55.8 1.0 CB B:ASP49 4.4 49.5 1.0 O3A B:DGT201 4.6 37.4 1.0 CZ B:PHE102 4.6 41.0 1.0 O B:HOH304 4.7 53.4 1.0 O5' G:DA9 4.7 53.7 1.0 CE2 B:PHE102 4.9 40.1 1.0 CA B:ASP51 4.9 41.4 1.0 NE2 B:GLN98 4.9 50.6 1.0

Y.Q.Chen, J.Zhang, J.H.Gan. The Crystal Structure of Asfvpolx: 1NT-Gap(P) DNA1: Dgtp Ternary Complex. To Be Published.