Manganese in PDB 5hrg: The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex

The structure of The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex, PDB code: 5hrg was solved by Y.Q.Chen, J.Zhang, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.060, 51.170, 55.540, 68.35, 86.25, 88.20
R / Rfree (%)	19.1 / 23.9

The binding sites of Manganese atom in the The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex (pdb code 5hrg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex, PDB code: 5hrg:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:26.6 occ:1.00 OD2 A:ASP49 2.0 28.3 1.0 OD2 A:ASP100 2.1 24.3 1.0 OP1 C:DC8 2.1 31.6 1.0 OD1 A:ASN51 2.1 21.9 1.0 O C:HOH104 2.4 21.3 1.0 CG A:ASP49 2.8 23.0 1.0 OD1 A:ASP49 3.0 21.3 1.0 CG A:ASP100 3.1 22.7 1.0 P C:DC8 3.1 26.4 1.0 CG A:ASN51 3.1 19.6 1.0 O3' C:DG7 3.2 25.1 1.0 ND2 A:ASN51 3.5 22.0 1.0 CB A:ASP100 3.7 19.6 1.0 OP2 C:DC8 4.0 26.4 1.0 OD1 A:ASP100 4.0 25.4 1.0 NE2 A:GLN98 4.2 24.4 1.0 CB A:ASP49 4.3 21.8 1.0 O C:HOH106 4.3 23.6 1.0 C3' C:DG7 4.4 24.3 1.0 O5' C:DC8 4.4 24.8 1.0 C5' C:DG7 4.4 25.4 1.0 CB A:ASN51 4.5 17.8 1.0 OP1 C:DG7 4.6 31.0 1.0 C4' C:DG7 4.6 24.2 1.0 O A:VAL50 4.7 15.5 1.0 C5' C:DC8 4.7 24.5 1.0 O A:HOH344 4.7 30.3 1.0 O5' C:DG7 4.9 26.9 1.0 CA A:ASP100 5.0 18.2 1.0 CZ A:PHE102 5.0 16.2 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Asfvpolx(D51N Mutant):DNA4 Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn201 b:37.4 occ:1.00 OD2 B:ASP100 2.0 31.3 1.0 OD2 B:ASP49 2.0 37.6 1.0 OP1 D:DC8 2.1 33.5 1.0 OD1 B:ASN51 2.1 31.6 1.0 CG B:ASP49 2.9 30.1 1.0 CG B:ASP100 3.0 25.2 1.0 OD1 B:ASP49 3.0 32.2 1.0 P D:DC8 3.0 28.0 1.0 O3' D:DG7 3.0 27.7 1.0 CG B:ASN51 3.1 26.9 1.0 ND2 B:ASN51 3.5 28.9 1.0 CB B:ASP100 3.6 21.8 1.0 OP2 D:DC8 3.9 26.9 1.0 OD1 B:ASP100 4.0 27.0 1.0 C5' D:DG7 4.2 29.7 1.0 C3' D:DG7 4.2 26.3 1.0 NE2 B:GLN98 4.2 24.7 1.0 CB B:ASP49 4.3 27.3 1.0 C4' D:DG7 4.3 26.8 1.0 O5' D:DC8 4.3 25.7 1.0 CB B:ASN51 4.5 23.5 1.0 O B:HOH336 4.6 24.3 1.0 C5' D:DC8 4.6 25.1 1.0 O B:VAL50 4.7 23.5 1.0 O5' D:DG7 4.7 33.6 1.0 CA B:ASP100 4.9 18.9 1.0 CZ B:PHE102 4.9 16.8 1.0 N B:ASP100 5.0 17.5 1.0

Y.Q.Chen, J.Zhang, J.H.Gan. The Crystal Structure of Se-Asfvpolx(L52/163M Mutant) in Complex with 1NT-Gap DNA1 To Be Published.