Manganese in PDB 5hrf: The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex

The structure of The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex, PDB code: 5hrf was solved by Y.Q.Chen, J.Zhang, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.52 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.706, 75.441, 108.450, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 26.3

The binding sites of Manganese atom in the The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex (pdb code 5hrf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex, PDB code: 5hrf:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:51.9 occ:1.00 OD1 A:ASP49 2.0 43.8 1.0 O2B A:DGT202 2.0 41.5 1.0 O2A A:DGT202 2.0 43.1 1.0 O1G A:DGT202 2.0 41.6 1.0 OD2 A:ASP51 2.0 40.3 1.0 O A:HOH302 2.0 44.9 1.0 CG A:ASP51 3.0 36.9 1.0 CG A:ASP49 3.1 43.0 1.0 PB A:DGT202 3.2 36.5 1.0 PA A:DGT202 3.3 37.9 1.0 PG A:DGT202 3.3 36.3 1.0 OD1 A:ASP51 3.3 40.8 1.0 OD2 A:ASP49 3.5 52.4 1.0 O3A A:DGT202 3.5 37.0 1.0 O3B A:DGT202 3.6 35.6 1.0 O A:ASP49 3.8 36.2 1.0 OG A:SER39 4.1 31.0 1.0 O A:HOH304 4.1 60.6 1.0 O3G A:DGT202 4.1 34.9 1.0 C5' A:DGT202 4.1 37.4 1.0 O5' A:DGT202 4.2 37.5 1.0 C A:ASP49 4.3 38.7 1.0 CB A:ASP49 4.3 39.2 1.0 CB A:ASP51 4.4 34.7 1.0 O1A A:DGT202 4.4 39.4 1.0 O2G A:DGT202 4.4 39.4 1.0 N A:ASP49 4.5 37.2 1.0 N A:SER39 4.5 33.4 1.0 OD2 A:ASP100 4.5 36.1 1.0 O A:HOH313 4.5 43.1 1.0 O1B A:DGT202 4.6 35.2 1.0 CA A:ASP49 4.6 37.8 1.0 CA A:GLY38 4.8 33.6 1.0 N A:ASP51 4.9 31.3 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Asfvpolx: DNA5: Dgtp Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn201 b:56.7 occ:1.00 O2B B:DGT203 2.0 42.7 1.0 O1A B:DGT203 2.0 52.9 1.0 O B:HOH301 2.0 55.3 1.0 O3G B:DGT203 2.0 44.2 1.0 OD1 B:ASP49 2.0 46.7 1.0 OD2 B:ASP51 2.1 42.9 1.0 CG B:ASP51 3.0 44.8 1.0 CG B:ASP49 3.1 49.3 1.0 OD1 B:ASP51 3.3 46.7 1.0 PB B:DGT203 3.3 43.3 1.0 PA B:DGT203 3.4 40.8 1.0 OD2 B:ASP49 3.5 53.5 1.0 PG B:DGT203 3.5 46.5 1.0 O3A B:DGT203 3.7 39.6 1.0 O3B B:DGT203 3.8 42.8 1.0 O B:HOH314 3.9 61.7 1.0 O B:ASP49 3.9 48.9 1.0 O B:HOH317 4.0 60.4 1.0 C5' B:DGT203 4.1 39.9 1.0 O2G B:DGT203 4.2 45.8 1.0 O5' B:DGT203 4.2 40.6 1.0 OG B:SER39 4.2 44.7 1.0 C B:ASP49 4.4 45.8 1.0 CB B:ASP49 4.4 47.3 1.0 CB B:ASP51 4.4 45.3 1.0 N B:ASP49 4.5 43.1 1.0 OD2 B:ASP100 4.5 49.5 1.0 O2A B:DGT203 4.5 41.4 1.0 O1G B:DGT203 4.6 48.8 1.0 O1B B:DGT203 4.6 44.4 1.0 N B:SER39 4.6 42.6 1.0 CA B:ASP49 4.7 45.9 1.0 CA B:GLY38 4.9 41.9 1.0 N B:ASP51 5.0 43.8 1.0

Y.Q.Chen, J.Zhang, J.H.Gan. The Crystal Structure of Se-Asfvpolx(L52/163M Mutant) in Complex with 1NT-Gap DNA1 To Be Published.