Manganese in PDB 5h6h: Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+

The structure of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+, PDB code: 5h6h was solved by T.-P.Cao, J.M.Choi, S.M.Shin, D.W.Le, S.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.58 / 1.45
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	50.318, 55.275, 58.699, 107.22, 102.71, 91.75
R / Rfree (%)	17.4 / 19.9

The binding sites of Manganese atom in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+ (pdb code 5h6h). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+, PDB code: 5h6h:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:10.7 occ:1.00 OE2 A:GLU149 2.1 12.8 1.0 OD2 A:ASP182 2.1 10.9 1.0 O A:HOH459 2.2 21.3 1.0 OE2 A:GLU243 2.2 11.4 1.0 ND1 A:HIS208 2.2 10.6 1.0 CD A:GLU149 3.0 12.2 1.0 CD A:GLU243 3.1 14.0 1.0 CE1 A:HIS208 3.1 10.9 1.0 CG A:ASP182 3.2 11.3 1.0 CG A:HIS208 3.2 9.8 1.0 OE1 A:GLU149 3.3 15.8 1.0 OE1 A:GLU243 3.4 16.2 1.0 CB A:HIS208 3.6 10.3 1.0 CB A:ASP182 3.6 11.4 1.0 O A:HOH552 4.0 20.7 1.0 NH2 A:ARG214 4.0 14.5 1.0 O A:HOH519 4.2 12.1 1.0 NE2 A:HIS208 4.2 11.2 1.0 OD1 A:ASP182 4.3 12.1 1.0 CD2 A:HIS185 4.3 11.8 1.0 CD2 A:HIS208 4.3 10.4 1.0 CG A:GLU149 4.4 9.8 1.0 CG A:GLU243 4.4 12.5 1.0 NE2 A:HIS185 4.5 12.4 1.0 CB A:GLU243 4.7 11.5 1.0 CA A:ASP182 4.9 10.8 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ribulose 3-Epimerase with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:11.8 occ:1.00 OE2 B:GLU149 2.1 13.5 1.0 OD2 B:ASP182 2.1 11.2 1.0 OE2 B:GLU243 2.2 12.9 1.0 ND1 B:HIS208 2.2 11.6 1.0 O B:HOH429 2.2 23.2 1.0 CD B:GLU149 3.0 14.2 1.0 CD B:GLU243 3.1 14.2 1.0 CE1 B:HIS208 3.1 12.5 1.0 CG B:ASP182 3.2 11.7 1.0 CG B:HIS208 3.2 10.4 1.0 OE1 B:GLU149 3.3 18.4 1.0 OE1 B:GLU243 3.4 16.7 1.0 CB B:HIS208 3.6 10.5 1.0 CB B:ASP182 3.7 10.5 1.0 O B:HOH520 4.0 27.1 1.0 NH2 B:ARG214 4.0 16.0 1.0 O B:HOH532 4.2 14.0 1.0 NE2 B:HIS208 4.3 13.7 1.0 OD1 B:ASP182 4.3 13.0 1.0 CD2 B:HIS208 4.3 13.5 1.0 CD2 B:HIS185 4.4 12.5 1.0 CG B:GLU243 4.4 13.5 1.0 CG B:GLU149 4.4 11.5 1.0 NE2 B:HIS185 4.6 13.4 1.0 CB B:GLU243 4.6 11.0 1.0 O B:HOH413 4.8 25.7 1.0 CA B:ASP182 4.9 11.1 1.0

S.M.Shin, T.P.Cao, J.M.Choi, S.B.Kim, S.J.Lee, S.H.Lee, D.W.Lee. TM0416, A Hyperthermophilic Promiscuous Nonphosphorylated Sugar Isomerase, Catalyzes Various C5AND C6EPIMERIZATION Reactions Appl. Environ. Microbiol. V. 83 2017.
ISSN: ESSN 1098-5336
PubMed: 28258150
DOI: 10.1128/AEM.03291-16