Manganese in PDB 5h60: Structure of Transferase Mutant-C23S,C199S

The structure of Structure of Transferase Mutant-C23S,C199S, PDB code: 5h60 was solved by J.B.Park, Y.Yoo, J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.87 / 3.64
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	115.940, 115.940, 100.080, 90.00, 90.00, 120.00
R / Rfree (%)	25.4 / 28.5

The binding sites of Manganese atom in the Structure of Transferase Mutant-C23S,C199S (pdb code 5h60). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of Transferase Mutant-C23S,C199S, PDB code: 5h60:

Manganese binding site 1 out of 1 in the Structure of Transferase Mutant-C23S,C199S


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Transferase Mutant-C23S,C199S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:75.8 occ:1.00 OD2 A:ASP225 1.8 71.8 1.0 O1A A:UDP401 2.0 95.0 1.0 OG A:SER324 2.3 0.7 1.0 OD1 A:ASN322 2.4 0.9 1.0 O3B A:UDP401 2.5 0.5 1.0 CG A:ASP225 2.8 77.6 1.0 CB A:SER324 2.8 0.1 1.0 PA A:UDP401 3.0 92.0 1.0 CG A:ASN322 3.1 0.2 1.0 O2A A:UDP401 3.3 81.7 1.0 OD1 A:ASP225 3.4 82.9 1.0 PB A:UDP401 3.6 0.4 1.0 O3A A:UDP401 3.7 0.2 1.0 CB A:ASN322 3.8 0.8 1.0 CB A:ASP225 3.8 80.1 1.0 CA A:SER324 3.9 0.3 1.0 N A:SER324 3.9 0.7 1.0 ND2 A:ASN322 4.0 0.0 1.0 O1B A:UDP401 4.0 0.6 1.0 O5' A:UDP401 4.4 94.9 1.0 OH A:TYR74 4.5 83.9 1.0 OD2 A:ASP223 4.6 84.3 1.0 C A:SER324 4.6 0.5 1.0 C5' A:UDP401 4.7 85.0 1.0 OG A:SER329 4.8 0.8 1.0 C A:ASN322 4.8 0.2 1.0 N A:GLN325 4.8 0.7 1.0 CA A:ASN322 4.9 0.2 1.0 O2B A:UDP401 4.9 0.2 1.0

J.B.Park, Y.H.Kim, Y.Yoo, J.Kim, S.H.Jun, J.W.Cho, S.El Qaidi, S.Walpole, S.Monaco, A.A.Garcia-Garcia, M.Wu, M.P.Hays, R.Hurtado-Guerrero, J.Angulo, P.R.Hardwidge, J.S.Shin, H.S.Cho. Structural Basis For Arginine Glycosylation of Host Substrates By Bacterial Effector Proteins. Nat Commun V. 9 4283 2018.
ISSN: ESSN 2041-1723
PubMed: 30327479
DOI: 10.1038/S41467-018-06680-6