Manganese in PDB 5h0o: Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion

The structure of Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion, PDB code: 5h0o was solved by L.K.Zhang, D.D.Xu, Y.C.Huang, Y.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.86 / 1.53
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.847, 66.847, 51.511, 90.00, 90.00, 90.00
R / Rfree (%)	14.1 / 17.4

The binding sites of Manganese atom in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion (pdb code 5h0o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion, PDB code: 5h0o:

Manganese binding site 1 out of 1 in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Manganese Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:9.8 occ:1.00 SG A:CYS79 2.3 13.7 1.0 SG A:CYS114 2.3 12.7 1.0 SG A:CYS76 2.3 10.9 1.0 SG A:CYS117 2.3 13.0 1.0 CB A:CYS117 3.3 11.6 1.0 CB A:CYS76 3.3 10.7 1.0 CB A:CYS79 3.4 11.7 1.0 CB A:CYS114 3.5 12.2 1.0 N A:CYS79 3.7 11.6 1.0 N A:CYS114 4.0 11.6 1.0 CA A:CYS79 4.0 12.4 1.0 O A:HOH304 4.2 33.4 1.0 N A:CYS117 4.2 11.6 1.0 O A:HOH435 4.2 27.9 1.0 CA A:CYS114 4.3 11.5 1.0 CA A:CYS117 4.3 11.4 1.0 CB A:THR86 4.5 15.3 1.0 O A:HOH441 4.6 24.8 1.0 OG1 A:THR86 4.7 15.8 1.0 CB A:HIS78 4.7 10.8 1.0 C A:HIS78 4.7 12.3 1.0 CA A:CYS76 4.7 9.9 1.0 CG2 A:THR86 4.8 15.8 1.0 C A:CYS114 4.9 10.8 1.0 O A:CYS114 4.9 11.8 1.0

L.K.Zhang, D.D.Xu, Y.C.Huang, X.Y.Zhu, M.W.Rui, T.Wan, X.Zheng, Y.L.Shen, X.D.Chen, K.S.Ma, Y.Gong. Structural and Functional Characterization of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease. Sci Rep V. 7 42542 2017.
ISSN: ESSN 2045-2322
PubMed: 28211904
DOI: 10.1038/SREP42542