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Manganese in PDB 5gtc: Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Protein crystallography data
The structure of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle, PDB code: 5gtc
was solved by
Y.Arimura,
D.Kato,
H.Suto,
H.Kurumizaka,
S.A.Kawashima,
K.Yamatsugu,
M.Kanai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.59 / 2.70 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 107.225, 109.017, 176.194, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 21.1 / 26.7 |
Other elements in 5gtc:
The structure of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle also contains other interesting chemical elements:
| Chlorine | (Cl) | 4 atoms |
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
(pdb code 5gtc). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle, PDB code: 5gtc:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Manganese where determined in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle, PDB code: 5gtc:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;
Manganese binding site 1 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 1 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Manganese binding site 2 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 2 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Manganese binding site 3 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 3 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Manganese binding site 4 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 4 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Manganese binding site 5 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 5 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Manganese binding site 6 out of 6 in 5gtc
Go back to
Manganese Binding Sites List in 5gtc
Manganese binding site 6 out
of 6 in the Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure of Complex Between Dmap-Sh Conjugated with A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) and Nucleosome Core Particle within 5.0Å range:
|
Reference:
Y.Amamoto,
Y.Aoi,
N.Nagashima,
H.Suto,
D.Yoshidome,
Y.Arimura,
A.Osakabe,
D.Kato,
H.Kurumizaka,
S.A.Kawashima,
K.Yamatsugu,
M.Kanai.
Synthetic Posttranslational Modifications: Chemical Catalyst-Driven Regioselective Histone Acylation of Native Chromatin. J. Am. Chem. Soc. V. 139 7568 2017.
ISSN: ESSN 1520-5126
PubMed: 28534629
DOI: 10.1021/JACS.7B02138
Page generated: Sun Oct 6 00:23:05 2024
ISSN: ESSN 1520-5126
PubMed: 28534629
DOI: 10.1021/JACS.7B02138
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