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Manganese in PDB 5fx8: Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris

Enzymatic activity of Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris

All present enzymatic activity of Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris:
1.13.11.12;

Protein crystallography data

The structure of Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris, PDB code: 5fx8 was solved by Y.Chen, A.Wennman, S.Karkehanadi, A.Engstrom, E.H.Oliw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.163 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 226.309, 50.470, 177.622, 90.00, 91.28, 90.00
R / Rfree (%) 19.52 / 24.46

Manganese Binding Sites:

The binding sites of Manganese atom in the Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris (pdb code 5fx8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris, PDB code: 5fx8:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 5fx8

Go back to Manganese Binding Sites List in 5fx8
Manganese binding site 1 out of 2 in the Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1000

b:8.0
occ:1.00
 O A:VAL618 1.9 39.7 1.0
NE2 A:HIS294 2.1 30.3 1.0
NE2 A:HIS478 2.2 16.3 1.0
OD1 A:ASN482 2.4 40.5 1.0
O A:HOH2066 2.4 34.0 1.0
NE2 A:HIS290 2.4 31.6 1.0
CD2 A:HIS290 3.0 10.4 1.0
C A:VAL618 3.0 7.5 1.0
CD2 A:HIS294 3.1 9.1 1.0
CE1 A:HIS294 3.1 10.2 1.0
CD2 A:HIS478 3.2 7.2 1.0
CE1 A:HIS478 3.2 7.6 1.0
CG A:ASN482 3.3 11.5 1.0
CE1 A:HIS290 3.7 11.5 1.0
CB A:ASN482 3.7 8.7 1.0
ND1 A:HIS294 4.2 8.0 1.0
CG A:HIS294 4.2 8.1 1.0
CG A:HIS290 4.3 10.2 1.0
ND1 A:HIS478 4.3 6.9 1.0
CA A:VAL618 4.3 7.6 1.0
CG A:HIS478 4.3 7.1 1.0
ND2 A:ASN482 4.3 10.0 1.0
CG2 A:VAL618 4.4 8.4 1.0
ND1 A:HIS290 4.6 11.8 1.0
N A:VAL618 4.7 7.1 1.0
O A:HOH2030 4.8 16.2 1.0
CB A:VAL618 4.8 9.4 1.0
O A:HOH2103 4.8 30.0 1.0
CG2 A:ILE328 4.9 6.5 1.0

Manganese binding site 2 out of 2 in 5fx8

Go back to Manganese Binding Sites List in 5fx8
Manganese binding site 2 out of 2 in the Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Complete Structure of Manganese Lipoxygenase of Gaeumannomyces Graminis and Partial Structure of Zonadhesin of Komagataella Pastoris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1000

b:56.4
occ:1.00
 O B:HOH2043 1.6 82.3 1.0
OD1 B:ASN482 1.6 28.3 1.0
O B:VAL618 1.8 48.5 1.0
NE2 B:HIS294 2.2 24.9 1.0
NE2 B:HIS290 2.3 25.9 1.0
NE2 B:HIS478 2.3 27.4 1.0
C B:VAL618 2.8 32.0 1.0
CG B:ASN482 2.8 26.7 1.0
CE1 B:HIS294 3.0 22.4 1.0
CD2 B:HIS478 3.2 24.5 1.0
CE1 B:HIS290 3.2 23.5 1.0
CD2 B:HIS290 3.2 23.0 1.0
CE1 B:HIS478 3.3 24.3 1.0
CD2 B:HIS294 3.3 21.0 1.0
CB B:ASN482 3.6 24.8 1.0
ND2 B:ASN482 3.9 31.4 1.0
ND1 B:HIS294 4.2 22.0 1.0
CA B:VAL618 4.2 27.6 1.0
O B:HOH2020 4.2 23.6 1.0
ND1 B:HIS290 4.3 21.1 1.0
ND1 B:HIS478 4.3 19.9 1.0
CG B:HIS478 4.4 20.6 1.0
CG B:HIS294 4.4 20.8 1.0
CG B:HIS290 4.4 21.9 1.0
O B:HOH2063 4.4 24.5 1.0
O B:SER617 4.7 46.4 1.0
CG2 B:VAL618 4.9 30.1 1.0

Reference:

Y.Chen, A.Wennman, S.Karkehabadi, A.Engstrom, E.H.Oliw. Crystal Structure of Linoleate 13R-Manganese Lipoxygenase and An Adhesion Protein J.Lipid Res. V. 57 1574 2016.
ISSN: ISSN 0022-2275
PubMed: 27313058
DOI: 10.1194/JLR.M069617
Page generated: Sun Oct 6 00:16:08 2024

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