Manganese in PDB 5f56: Structure of Recj Complexed with Dna and Ssb-Ct

The structure of Structure of Recj Complexed with Dna and Ssb-Ct, PDB code: 5f56 was solved by Y.Zhao, Y.Hua, K.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.05 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.220, 102.220, 166.120, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 23.9

The binding sites of Manganese atom in the Structure of Recj Complexed with Dna and Ssb-Ct (pdb code 5f56). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Recj Complexed with Dna and Ssb-Ct, PDB code: 5f56:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of Recj Complexed with Dna and Ssb-Ct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Recj Complexed with Dna and Ssb-Ct within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn804 b:74.7 occ:1.00 OD2 A:ASP81 2.2 49.0 1.0 OD2 A:ASP135 2.2 54.7 1.0 OD2 A:ASP79 2.2 49.3 1.0 OD1 A:ASP81 2.2 47.0 1.0 CG A:ASP81 2.5 45.4 1.0 OP1 C:DT2 2.6 68.1 1.0 CG A:ASP135 3.3 51.3 1.0 CG A:ASP79 3.3 45.8 1.0 CB A:ASP79 3.7 40.8 1.0 MN A:MN805 3.8 49.1 1.0 OD1 A:ASP135 3.8 52.2 1.0 P C:DT2 3.8 65.5 1.0 O5' C:DT2 4.0 64.7 1.0 CB A:ASP81 4.0 39.6 1.0 O A:HOH922 4.0 43.0 1.0 N A:GLY84 4.2 32.3 1.0 CB A:ASP83 4.4 27.7 1.0 OD1 A:ASP79 4.4 47.0 1.0 OD1 A:ASP223 4.4 43.1 1.0 CB A:ASP135 4.4 46.9 1.0 O C:HOH101 4.5 47.2 1.0 OP2 C:DT2 4.6 69.0 1.0 O A:ASP135 4.6 48.6 1.0 N A:ASP81 4.7 35.6 1.0 CA A:GLY84 4.8 30.6 1.0 OD2 A:ASP83 4.8 36.4 1.0 CA A:ASP81 4.9 36.2 1.0

Manganese binding site 2 out of 2 in the Structure of Recj Complexed with Dna and Ssb-Ct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Recj Complexed with Dna and Ssb-Ct within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn805 b:49.1 occ:1.00 NE2 A:HIS159 2.2 41.3 1.0 OD2 A:ASP83 2.2 36.4 1.0 OD1 A:ASP135 2.3 52.2 1.0 OD2 A:ASP223 2.3 47.7 1.0 CG A:ASP223 3.0 44.5 1.0 CE1 A:HIS159 3.0 44.8 1.0 CG A:ASP135 3.1 51.3 1.0 O C:HOH101 3.2 47.2 1.0 CD2 A:HIS159 3.2 41.9 1.0 OD1 A:ASP223 3.2 43.1 1.0 OD2 A:ASP135 3.3 54.7 1.0 CG A:ASP83 3.3 35.4 1.0 OP2 C:DT2 3.3 69.0 1.0 CB A:ASP83 3.7 27.7 1.0 MN A:MN804 3.8 74.7 1.0 P C:DT2 3.9 65.5 1.0 OP1 C:DT2 4.0 68.1 1.0 O5' C:DT2 4.1 64.7 1.0 N A:GLY189 4.2 46.1 1.0 ND1 A:HIS159 4.2 45.4 1.0 CB A:ASP223 4.3 39.7 1.0 CG A:HIS159 4.3 43.7 1.0 OD1 A:ASP83 4.4 36.0 1.0 CB A:ASP135 4.5 46.9 1.0 CB A:THR188 4.7 34.2 1.0 CA A:GLY189 4.8 41.9 1.0 O A:HOH922 4.8 43.0 1.0 C5' C:DT2 5.0 60.7 1.0

K.Cheng, H.Xu, X.Chen, L.Wang, B.Tian, Y.Zhao, Y.Hua. Structural Basis For Dna 5 -End Resection By Recj Elife V. 5 14294 2016.
ISSN: ESSN 2050-084X
PubMed: 27058167
DOI: 10.7554/ELIFE.14294