Manganese in PDB 5f54: Structure of Recj Complexed with Dtmp

The structure of Structure of Recj Complexed with Dtmp, PDB code: 5f54 was solved by Y.Hua, Y.Zhao, K.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.29 / 2.70
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	106.530, 106.530, 161.900, 90.00, 90.00, 120.00
R / Rfree (%)	20.6 / 25.2

The binding sites of Manganese atom in the Structure of Recj Complexed with Dtmp (pdb code 5f54). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Recj Complexed with Dtmp, PDB code: 5f54:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of Recj Complexed with Dtmp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Recj Complexed with Dtmp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn801 b:68.9 occ:1.00 OD2 A:ASP135 2.1 79.2 1.0 OD2 A:ASP81 2.1 59.5 1.0 OD2 A:ASP79 2.2 57.4 1.0 OD1 A:ASP81 2.7 58.4 1.0 CG A:ASP81 2.7 53.0 1.0 O A:HOH903 2.8 48.1 1.0 CG A:ASP135 3.2 70.1 1.0 CG A:ASP79 3.4 68.8 1.0 OD1 A:ASP135 3.5 78.6 1.0 MN A:MN802 3.6 84.3 1.0 CB A:ASP79 4.0 54.1 1.0 CE1 A:HIS160 4.1 78.1 1.0 CB A:ASP81 4.2 50.3 1.0 OD1 A:ASP223 4.2 82.9 1.0 CB A:ASP83 4.4 54.7 1.0 NE2 A:HIS160 4.4 73.3 1.0 OD1 A:ASP79 4.4 69.1 1.0 CB A:ASP135 4.5 66.8 1.0 O A:ASP135 4.6 81.4 1.0 N A:GLY84 4.6 64.7 1.0 OD2 A:ASP223 4.6 0.5 1.0 CE2 A:TYR114 4.7 61.2 1.0 OD2 A:ASP83 4.7 56.0 1.0 CG A:ASP223 4.9 80.3 1.0

Manganese binding site 2 out of 2 in the Structure of Recj Complexed with Dtmp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Recj Complexed with Dtmp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn802 b:84.3 occ:1.00 NE2 A:HIS159 2.0 66.1 1.0 OD2 A:ASP223 2.1 0.5 1.0 OD2 A:ASP83 2.1 56.0 1.0 OD1 A:ASP135 2.1 78.6 1.0 CE1 A:HIS159 3.0 61.9 1.0 O A:HOH903 3.0 48.1 1.0 CG A:ASP223 3.0 80.3 1.0 CG A:ASP135 3.0 70.1 1.0 CD2 A:HIS159 3.1 75.3 1.0 CG A:ASP83 3.2 56.1 1.0 OD2 A:ASP135 3.2 79.2 1.0 OD1 A:ASP223 3.4 82.9 1.0 CB A:ASP83 3.5 54.7 1.0 MN A:MN801 3.6 68.9 1.0 CE1 A:HIS160 3.7 78.1 1.0 ND1 A:HIS159 4.1 53.3 1.0 CG A:HIS159 4.2 55.3 1.0 OD1 A:ASP83 4.2 55.6 1.0 CB A:ASP223 4.3 57.8 1.0 N A:GLY189 4.3 61.6 1.0 NE2 A:HIS160 4.3 73.3 1.0 CB A:ASP135 4.5 66.8 1.0 ND1 A:HIS160 4.5 73.3 1.0 OD2 A:ASP81 4.8 59.5 1.0 CA A:GLY189 4.8 49.6 1.0 CB A:THR188 4.9 52.0 1.0

K.Cheng, H.Xu, X.Chen, L.Wang, B.Tian, Y.Zhao, Y.Hua. Structural Basis For Dna 5 -End Resection By Recj Elife V. 5 14294 2016.
ISSN: ESSN 2050-084X
PubMed: 27058167
DOI: 10.7554/ELIFE.14294