Manganese in PDB 5cov: Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn

The structure of Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn, PDB code: 5cov was solved by M.C.Unciuleac, Y.Goldgur, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.74 / 2.20
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	55.479, 55.479, 98.551, 90.00, 90.00, 120.00
R / Rfree (%)	19.1 / 26.7

The binding sites of Manganese atom in the Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn (pdb code 5cov). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn, PDB code: 5cov:

Manganese binding site 1 out of 1 in the Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure and Mechanism of A Eukaryal Nick-Sealing Rna Ligase K170M+Mn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:79.0 occ:1.00 O A:HOH502 2.2 66.4 1.0 O A:HOH546 2.4 55.8 1.0 O A:HOH512 2.6 54.9 1.0 O A:HOH543 3.5 65.9 1.0 OE2 A:GLU312 3.9 53.3 1.0 OE1 A:GLU312 3.9 57.7 1.0 OE2 A:GLU227 4.1 49.5 1.0 CD A:GLU312 4.3 54.0 1.0 O A:GLY173 4.6 52.0 1.0 O A:LEU171 4.6 50.0 1.0 OD1 A:ASP172 4.6 53.3 1.0 O A:HOH547 4.8 54.3 1.0 N A:GLY173 5.0 47.8 1.0

M.C.Unciuleac, Y.Goldgur, S.Shuman. Structure and Two-Metal Mechanism of A Eukaryal Nick-Sealing Rna Ligase. Proc.Natl.Acad.Sci.Usa V. 112 13868 2015.
ISSN: ESSN 1091-6490
PubMed: 26512110
DOI: 10.1073/PNAS.1516536112