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Manganese in PDB 5c5t: The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex

Protein crystallography data

The structure of The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex, PDB code: 5c5t was solved by C.W.Levy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.43 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 33.790, 156.950, 41.240, 90.00, 90.02, 90.00
R / Rfree (%) 17.8 / 21.1

Other elements in 5c5t:

The structure of The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex (pdb code 5c5t). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex, PDB code: 5c5t:

Manganese binding site 1 out of 1 in 5c5t

Go back to Manganese Binding Sites List in 5c5t
Manganese binding site 1 out of 1 in the The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Viral Collagen Prolyl Hydroxylase Vcph From Paramecium Bursaria Chlorella Virus-1 - 2OG Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn303

b:47.3
occ:1.00
NE2 A:HIS114 2.0 39.9 1.0
O A:HOH446 2.1 37.6 1.0
OD2 A:ASP34 2.2 27.9 1.0
O A:HOH548 2.3 40.2 1.0
OD1 A:ASP34 2.6 27.0 1.0
CG A:ASP34 2.7 23.6 1.0
CD2 A:HIS114 2.9 36.6 1.0
CE1 A:HIS114 3.0 33.7 1.0
CG A:HIS114 4.1 34.3 1.0
ND1 A:HIS114 4.1 36.1 1.0
CB A:ASP34 4.2 23.9 1.0
SG A:CYS33 4.6 21.8 1.0
O A:SER111 4.6 34.5 1.0
SG A:CYS115 4.8 25.1 1.0

Reference:

J.E.Longbotham, C.Levy, L.O.Johannissen, H.Tarhonskaya, S.Jiang, C.Loenarz, E.Flashman, S.Hay, C.J.Schofield, N.S.Scrutton. Structure and Mechanism of A Viral Collagen Prolyl Hydroxylase. Biochemistry V. 54 6093 2015.
ISSN: ISSN 0006-2960
PubMed: 26368022
DOI: 10.1021/ACS.BIOCHEM.5B00789
Page generated: Tue Dec 15 04:36:28 2020

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