Manganese in PDB 5c3d: Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di

All present enzymatic activity of Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di:
2.4.1.37; 2.4.1.40;

The structure of Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di, PDB code: 5c3d was solved by S.Gagnon, P.Meloncelli, R.B.Zheng, O.Haji-Ghassemi, A.R.Johal, S.Borisova, T.L.Lowary, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.95 / 1.39
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.540, 149.770, 79.270, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 21.3

The binding sites of Manganese atom in the Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di (pdb code 5c3d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di, PDB code: 5c3d:

Manganese binding site 1 out of 1 in the Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Abbb + Udp-C-Gal (Short Soak) + Di within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:21.1 occ:1.00 O23 A:URM403 2.1 23.4 1.0 O10 A:URM403 2.2 20.9 1.0 O A:HOH694 2.2 24.5 1.0 OD2 A:ASP211 2.2 17.5 1.0 OD1 A:ASP213 2.4 18.7 1.0 OD2 A:ASP213 2.6 21.8 1.0 CG A:ASP213 2.8 18.8 1.0 CG A:ASP211 3.2 15.1 1.0 P22 A:URM403 3.4 22.6 1.0 P9 A:URM403 3.4 20.8 1.0 CB A:ASP211 3.6 14.4 1.0 O12 A:URM403 3.6 21.6 1.0 O7 A:URM403 3.7 18.4 1.0 C5 A:URM403 4.3 19.3 1.0 OD1 A:ASP211 4.3 15.9 1.0 CB A:ASP213 4.4 16.8 1.0 O A:HOH699 4.4 38.5 1.0 O8 A:URM403 4.4 19.5 1.0 O A:HOH665 4.5 30.9 1.0 O24 A:URM403 4.5 25.5 1.0 C3 A:URM403 4.5 19.1 1.0 C45 A:URM403 4.5 22.6 1.0 O11 A:URM403 4.6 21.5 1.0 O A:HOH608 4.8 39.9 1.0 C4 A:URM403 4.9 19.5 1.0 CB A:ALA268 4.9 14.7 1.0 C41 A:URM403 4.9 22.6 1.0 CE A:MET266 4.9 22.9 1.0 SD A:MET214 5.0 17.0 1.0 CA A:ASP211 5.0 13.4 1.0

S.M.Gagnon, P.J.Meloncelli, R.B.Zheng, O.Haji-Ghassemi, A.R.Johal, S.N.Borisova, T.L.Lowary, S.V.Evans. High Resolution Structures of the Human Abo(H) Blood Group Enzymes in Complex with Donor Analogs Reveal That the Enzymes Utilize Multiple Donor Conformations to Bind Substrates in A Stepwise Manner. J.Biol.Chem. V. 290 27040 2015.
ISSN: ESSN 1083-351X
PubMed: 26374898
DOI: 10.1074/JBC.M115.682401