Manganese in PDB 5ah5: Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams

All present enzymatic activity of Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams:
6.1.1.4;

The structure of Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams, PDB code: 5ah5 was solved by A.Palencia, S.Chopra, C.Virus, S.Schulwitz, B.R.Temple, S.Cusack, J.S.Reader, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.58 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	169.910, 50.320, 170.520, 90.00, 93.48, 90.00
R / Rfree (%)	19.416 / 23.732

The structure of Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Manganese atom in the Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams (pdb code 5ah5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams, PDB code: 5ah5:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn1077 b:84.9 occ:1.00 N7 C:G1 2.0 66.0 1.0 C8 C:G1 2.9 68.8 1.0 C5 C:G1 3.2 74.7 1.0 O C:HOH2001 3.5 54.1 1.0 O6 C:G1 3.7 64.3 1.0 OP2 C:G1 3.7 76.6 1.0 C6 C:G1 3.8 66.6 1.0 O C:HOH2002 4.1 60.0 1.0 N9 C:G1 4.2 72.2 1.0 C4 C:G1 4.3 73.4 1.0 OP3 C:G1 4.4 82.5 1.0 P C:G1 4.6 88.4 1.0 N4 C:C2 4.8 43.3 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Ternary Complex of Agrobacterium Radiobacter K84 AGNB2 Leurs-Trna-Leuams within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn1077 b:91.1 occ:1.00 N7 D:G1 2.3 77.7 1.0 C8 D:G1 3.2 84.3 1.0 OP3 D:G1 3.4 1.0 1.0 C5 D:G1 3.4 76.1 1.0 O6 D:G1 3.8 54.2 1.0 C6 D:G1 4.0 64.1 1.0 OP2 D:G1 4.0 0.7 1.0 O D:HOH2001 4.1 63.1 1.0 P D:G1 4.3 0.5 1.0 N9 D:G1 4.4 80.5 1.0 N4 D:C2 4.5 48.5 1.0 C4 D:G1 4.6 77.9 1.0

S.Chopra, A.Palencia, C.Virus, S.Schulwitz, B.R.Temple, S.Cusack, J.Reader. Structural Characterization of Antibiotic Self-Immunity Trna Synthetase in Plant Tumour Biocontrol Agent. Nat.Commun. V. 7 12928 2016.
ISSN: ISSN 2041-1723
PubMed: 27713402
DOI: 10.1038/NCOMMS12928