Manganese in PDB 4zcf: Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I

The structure of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I, PDB code: 4zcf was solved by Y.K.Gupta, S.H.Chan, S.Y.Xu, A.K.Aggarwal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	101.838, 101.838, 533.031, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 26.3

The structure of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Manganese atom in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I (pdb code 4zcf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I, PDB code: 4zcf:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:0.7 occ:1.00 NE2 A:HIS201 2.7 36.0 1.0 CD2 A:HIS201 3.1 36.1 1.0 O A:HOH830 3.7 53.0 1.0 OD1 A:ASN202 3.7 31.2 1.0 CE1 A:HIS201 3.9 36.0 1.0 CG A:HIS201 4.4 35.0 1.0 NZ A:LYS31 4.6 68.3 1.0 ND1 B:HIS220 4.6 45.0 1.0 CG A:ASN202 4.8 44.4 1.0 ND1 A:HIS201 4.8 37.0 1.0 CE A:LYS31 4.9 61.3 1.0

Manganese binding site 2 out of 2 in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn702 b:76.0 occ:1.00 OE2 A:GLU213 2.4 76.7 1.0 NE2 C:HIS168 2.7 52.3 1.0 CD2 C:HIS168 3.4 52.4 1.0 CD A:GLU213 3.5 75.3 1.0 CE1 C:HIS168 3.9 52.3 1.0 OE1 A:GLU213 4.1 66.7 1.0 CG C:GLU172 4.5 64.0 1.0 CG A:GLU213 4.5 47.1 1.0 O C:GLY203 4.6 54.3 1.0 CG C:HIS168 4.6 51.0 1.0 CD C:GLU172 4.7 83.8 1.0 CD2 C:LEU204 4.8 57.6 1.0 OE2 C:GLU172 4.9 67.8 1.0 ND1 C:HIS168 4.9 53.3 1.0 CG2 C:THR202 4.9 57.2 1.0

Y.K.Gupta, S.H.Chan, S.Y.Xu, A.K.Aggarwal. Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long-Range Diffusion By ECOP15I. Nat Commun V. 6 7363 2015.
ISSN: ESSN 2041-1723
PubMed: 26067164
DOI: 10.1038/NCOMMS8363