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Manganese in PDB 4z67: The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida

Protein crystallography data

The structure of The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z67 was solved by X.Tu, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.327, 86.327, 107.064, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 17.4

Other elements in 4z67:

The structure of The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida (pdb code 4z67). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z67:

Manganese binding site 1 out of 1 in 4z67

Go back to Manganese Binding Sites List in 4z67
Manganese binding site 1 out of 1 in the The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The 1.5-Angstrom Crystal Structure of Mn(2+)-Bound Pqqb From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn403

b:16.4
occ:0.78
OD2 A:ASP92 2.1 22.1 1.0
O A:HOH526 2.1 26.1 1.0
O2 A:MLT402 2.2 25.3 0.8
O4 A:MLT402 2.2 20.9 0.8
NE2 A:HIS269 2.3 17.5 1.0
O3 A:MLT402 2.3 24.6 0.8
C1 A:MLT402 2.9 27.3 0.8
C2 A:MLT402 3.0 25.8 0.8
CG A:ASP92 3.1 23.2 1.0
CE1 A:HIS269 3.1 18.2 1.0
C4 A:MLT402 3.2 25.6 0.8
OD1 A:ASP92 3.3 23.9 1.0
CD2 A:HIS269 3.3 16.9 1.0
C3 A:MLT402 3.7 25.6 0.8
N A:GLY11 4.0 15.3 1.0
O A:HOH518 4.0 36.4 1.0
O1 A:MLT402 4.1 28.7 0.8
ND1 A:HIS269 4.3 16.7 1.0
O5 A:MLT402 4.4 28.3 0.8
CB A:ASP92 4.4 18.5 1.0
CG A:HIS269 4.4 15.3 1.0
O A:HOH697 4.5 34.9 1.0
CA A:GLY11 4.6 17.3 1.0
OE1 A:GLN90 4.8 32.6 1.0
C A:ALA10 4.9 14.8 1.0
CA A:ALA10 4.9 16.0 1.0

Reference:

X.Tu, C.M.Wilmot. Crystal Structures Reveal Metal-Binding Plasticity at the Active Site of Pqqb To Be Published.
Page generated: Sat Oct 5 23:05:58 2024

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