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Manganese in PDB 4wnh: Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose

Enzymatic activity of Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose

All present enzymatic activity of Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose:
3.4.21.22;

Protein crystallography data

The structure of Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose, PDB code: 4wnh was solved by H.Yu, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.95
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 89.481, 89.481, 42.895, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 22.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose (pdb code 4wnh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose, PDB code: 4wnh:

Manganese binding site 1 out of 1 in 4wnh

Go back to Manganese Binding Sites List in 4wnh
Manganese binding site 1 out of 1 in the Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:24.5
occ:1.00
O2B A:UDX402 1.8 26.1 0.9
OD1 A:ASP227 2.1 27.9 1.0
NE2 A:HIS382 2.2 22.9 1.0
OD2 A:ASP225 2.2 21.9 1.0
O2A A:UDX402 2.2 29.9 0.9
OD2 A:ASP227 2.4 25.3 1.0
CG A:ASP227 2.6 26.4 1.0
CD2 A:HIS382 3.1 24.1 1.0
CG A:ASP225 3.2 22.5 1.0
CE1 A:HIS382 3.2 22.4 1.0
PB A:UDX402 3.2 31.8 0.9
CB A:ASP225 3.5 22.6 1.0
PA A:UDX402 3.5 32.2 0.9
O3A A:UDX402 3.7 32.0 0.9
O3D A:UDX402 3.9 26.4 0.9
CB A:ASP227 4.1 26.8 1.0
O3B A:UDX402 4.1 34.2 0.9
CB A:ASN384 4.2 24.9 1.0
OD1 A:ASP225 4.3 23.1 1.0
CG A:HIS382 4.3 23.5 1.0
ND1 A:HIS382 4.3 22.5 1.0
O1B A:UDX402 4.4 26.1 0.9
C5D A:UDX402 4.4 30.8 0.9
CA A:ASN384 4.4 25.3 1.0
O5D A:UDX402 4.5 31.8 0.9
O1A A:UDX402 4.6 35.6 0.9
O A:HOH522 4.6 29.2 1.0
C3D A:UDX402 4.7 29.5 0.9
N A:ASP227 4.8 27.8 1.0
C4D A:UDX402 4.8 30.3 0.9
CA A:ASP227 4.9 26.5 1.0
N A:ASN384 4.9 25.3 1.0
CA A:ASP225 4.9 21.8 1.0
O A:ASP227 5.0 27.2 1.0

Reference:

H.Yu, H.Li. Crystal Structure of Mouse Xyloside Xylosyltransferase 1 Complexed with Manganese,Acceptor Ligand and Udp-Xylose To Be Published.
Page generated: Sat Oct 5 22:51:34 2024

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