Manganese in PDB 4rti: The Crystal Structure of Psbp From Spinacia Oleracea

The structure of The Crystal Structure of Psbp From Spinacia Oleracea, PDB code: 4rti was solved by P.Cao, Y.Xie, M.Li, X.W.Pan, H.M.Zhang, X.L.Zhao, X.D.Su, T.Cheng, W.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.354, 45.394, 80.884, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 22.8

The structure of The Crystal Structure of Psbp From Spinacia Oleracea also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Manganese atom in the The Crystal Structure of Psbp From Spinacia Oleracea (pdb code 4rti). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of Psbp From Spinacia Oleracea, PDB code: 4rti:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of Psbp From Spinacia Oleracea


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Psbp From Spinacia Oleracea within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn801 b:13.2 occ:1.00 OD1 A:ASP165 1.9 17.9 1.0 NE2 A:HIS144 2.0 16.9 1.0 CL A:CL803 2.0 28.5 1.0 CG A:ASP165 2.9 19.6 1.0 CD2 A:HIS144 2.9 17.6 1.0 CE1 A:HIS144 3.0 17.0 1.0 CB A:ASP165 3.3 18.7 1.0 CA A:ASP165 3.9 18.5 1.0 OD2 A:ASP165 4.0 19.4 1.0 ND1 A:HIS144 4.1 16.6 1.0 CG A:HIS144 4.1 17.2 1.0 CD1 A:LEU132 4.3 18.1 1.0 CE2 A:PHE169 4.5 20.0 1.0 CD2 A:LEU132 4.6 18.4 1.0 O A:HOH966 4.7 33.6 1.0 N A:ASP165 4.9 17.4 1.0 C A:ASP165 4.9 18.6 1.0 CG A:LEU132 4.9 17.8 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of Psbp From Spinacia Oleracea


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Psbp From Spinacia Oleracea within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn802 b:14.7 occ:1.00 OD2 A:ASP98 2.0 20.9 1.0 O A:HOH903 2.1 20.1 1.0 CG A:ASP98 2.7 20.6 1.0 OD1 A:ASP98 2.8 21.0 1.0 O A:HOH929 4.0 25.4 1.0 O A:HOH901 4.1 17.5 1.0 CB A:ASP98 4.1 20.6 1.0 O A:HOH957 4.2 32.1 1.0 OG A:SER110 4.7 25.9 1.0

P.Cao, Y.Xie, M.Li, X.W.Pan, H.M.Zhang, X.L.Zhao, X.D.Su, T.Cheng, W.Chang. Crystal Structure Analysis of Extrinsic Psbp Protein of Photosystem II Reveals A Manganese-Induced Conformational Change Mol Plant 2015.
ISSN: ESSN 1752-9867
PubMed: 25704164
DOI: 10.1016/J.MOLP.2015.01.002