Manganese in PDB 4r79: MOS1 Transposase Paired-End Complex with Left Transposon End

The structure of MOS1 Transposase Paired-End Complex with Left Transposon End, PDB code: 4r79 was solved by J.M.Richardson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.87 / 3.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	119.783, 86.885, 132.379, 90.00, 99.03, 90.00
R / Rfree (%)	22.7 / 27

The binding sites of Manganese atom in the MOS1 Transposase Paired-End Complex with Left Transposon End (pdb code 4r79). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the MOS1 Transposase Paired-End Complex with Left Transposon End, PDB code: 4r79:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the MOS1 Transposase Paired-End Complex with Left Transposon End


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of MOS1 Transposase Paired-End Complex with Left Transposon End within 5.0Å range: probe atom residue distance (Å) B Occ H:Mn101 b:81.5 occ:1.00 OD2 B:ASP249 1.9 76.2 1.0 O3' H:DC53 2.5 0.3 1.0 OD1 B:ASP156 2.6 68.8 1.0 OP1 H:DT54 2.8 0.1 1.0 CG B:ASP249 2.9 84.0 1.0 P H:DT54 2.9 0.8 1.0 C3' H:DC53 3.0 88.5 1.0 OD2 B:ASP156 3.0 78.7 1.0 CG B:ASP156 3.2 73.9 1.0 OD1 B:ASP249 3.3 95.9 1.0 OP2 H:DT54 3.3 0.7 1.0 C4' H:DC53 3.4 72.0 1.0 C5' H:DC53 3.9 69.5 1.0 CB B:ASP249 4.2 74.3 1.0 O5' H:DT54 4.5 0.8 1.0 C2' H:DC53 4.5 77.8 1.0 O B:GLU157 4.5 76.2 1.0 CB B:ASP156 4.6 68.7 1.0 O4' H:DC53 4.7 65.5 1.0 N B:GLU157 4.7 65.8 1.0 OE1 B:GLU157 4.8 0.9 1.0

Manganese binding site 2 out of 2 in the MOS1 Transposase Paired-End Complex with Left Transposon End


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of MOS1 Transposase Paired-End Complex with Left Transposon End within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:69.1 occ:1.00 OD2 A:ASP156 2.2 72.8 1.0 OD2 A:ASP249 2.3 53.9 1.0 CG A:ASP156 3.0 71.8 1.0 OD1 A:ASP156 3.2 75.1 1.0 CG A:ASP249 3.3 59.2 1.0 OD1 A:ASP249 3.6 65.7 1.0 O A:GLU157 4.0 65.5 1.0 O F:HOH101 4.2 26.6 1.0 N A:GLU157 4.4 60.2 1.0 CB A:ASP156 4.5 66.9 1.0 OE1 A:GLU157 4.6 0.7 1.0 CB A:ASP249 4.6 57.6 1.0 OD2 A:ASP284 4.7 75.1 1.0 CB A:GLU157 4.8 73.7 1.0 C A:GLU157 4.9 58.2 1.0 CA A:GLU157 5.0 64.3 1.0

J.Dornan, H.Grey, J.M.Richardson. Structural Basis of Inverted Repeat Preferences of Mariner Transposons. To Be Published.