Atomistry » Manganese » PDB 4nxz-4phd » 4pcl
Atomistry »
  Manganese »
    PDB 4nxz-4phd »
      4pcl »

Manganese in PDB 4pcl: X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion.

Protein crystallography data

The structure of X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion., PDB code: 4pcl was solved by J.W.Fairman, T.E.Edwards, D.Lorimer, Seattle Structural Genomics Centerfor Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.84 / 1.85
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 123.870, 123.870, 121.310, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 20.9

Manganese Binding Sites:

The binding sites of Manganese atom in the X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion. (pdb code 4pcl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion., PDB code: 4pcl:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 4pcl

Go back to Manganese Binding Sites List in 4pcl
Manganese binding site 1 out of 2 in the X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn303

b:22.6
occ:1.00
OD1 A:ASP136 2.1 29.0 1.0
O A:HOH419 2.2 26.4 1.0
OD1 A:ASN163 2.2 23.7 1.0
OD2 A:ASP162 2.2 21.3 1.0
CG A:ASN163 3.1 26.5 1.0
CG A:ASP162 3.2 21.2 1.0
CG A:ASP136 3.2 27.7 1.0
ND2 A:ASN163 3.3 21.9 1.0
CB A:ASP162 3.5 21.7 1.0
OD2 A:ASP136 3.6 28.1 1.0
NZ A:LYS139 3.9 28.4 1.0
O A:ALA38 4.0 32.3 1.0
O A:HOH416 4.1 25.2 1.0
CE A:SAM301 4.2 34.4 1.0
OD1 A:ASP162 4.2 21.2 1.0
CB A:ASN163 4.5 20.5 1.0
CB A:ASP136 4.5 24.1 1.0
O A:HOH442 4.5 33.1 1.0
C A:ASP162 4.6 19.1 1.0
CA A:ASP162 4.7 19.9 1.0
CD2 A:LEU40 4.7 26.1 1.0
N A:ASN163 4.7 19.6 1.0
CA A:ASP136 4.9 21.6 1.0
O A:ASP136 4.9 23.5 1.0
CE A:LYS139 5.0 28.4 1.0

Manganese binding site 2 out of 2 in 4pcl

Go back to Manganese Binding Sites List in 4pcl
Manganese binding site 2 out of 2 in the X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn307

b:19.2
occ:1.00
OD1 B:ASP136 2.1 20.7 1.0
OD2 B:ASP162 2.2 20.3 1.0
O B:HOH411 2.2 19.0 1.0
OD1 B:ASN163 2.2 18.1 1.0
CG B:ASP162 3.1 18.9 1.0
CG B:ASP136 3.1 22.9 1.0
CG B:ASN163 3.2 21.5 1.0
OD2 B:ASP136 3.5 20.3 1.0
ND2 B:ASN163 3.5 22.9 1.0
CB B:ASP162 3.5 19.6 1.0
O B:ALA38 3.9 24.3 1.0
O B:HOH440 4.0 21.9 1.0
O B:HOH420 4.1 19.8 1.0
OD1 B:ASP162 4.2 18.4 1.0
CE B:SAM301 4.3 24.2 1.0
CB B:ASP136 4.6 17.6 1.0
CB B:ASN163 4.6 20.0 1.0
CD2 B:LEU40 4.6 16.0 1.0
O B:HOH433 4.6 26.9 1.0
C B:ASP162 4.7 16.9 1.0
CA B:ASP162 4.7 16.7 1.0
N B:ASN163 4.7 16.4 1.0
CA B:ASP136 5.0 17.8 1.0

Reference:

J.W.Fairman, T.E.Edwards, D.Lorimer. X-Ray Crystal Structure of An O-Methyltransferase From Anaplasma Phagocytophilum Bound to Sam and A Manganese Ion. To Be Published.
Page generated: Tue Dec 15 04:25:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy