Manganese in PDB 4p9x: Structure of Cona/RH3GLU Complex

The structure of Structure of Cona/RH3GLU Complex, PDB code: 4p9x was solved by F.Sakai, M.S.Weiss, G.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.06
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	84.173, 116.028, 84.255, 90.00, 95.98, 90.00
R / Rfree (%)	24.5 / 29.5

The structure of Structure of Cona/RH3GLU Complex also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Structure of Cona/RH3GLU Complex (pdb code 4p9x). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Cona/RH3GLU Complex, PDB code: 4p9x:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:30.6 occ:1.00 OD1 A:ASP19 2.0 32.2 1.0 O A:HOH403 2.1 26.3 1.0 NE2 A:HIS24 2.1 33.8 1.0 O A:HOH404 2.1 25.4 1.0 OD2 A:ASP10 2.2 25.8 1.0 OE2 A:GLU8 2.3 26.3 1.0 CE1 A:HIS24 3.0 34.5 1.0 CG A:ASP19 3.0 31.9 1.0 CG A:ASP10 3.1 28.8 1.0 CD2 A:HIS24 3.2 34.5 1.0 CD A:GLU8 3.3 25.6 1.0 CB A:ASP10 3.6 26.4 1.0 OD2 A:ASP19 3.6 30.8 1.0 OE1 A:GLU8 3.6 24.7 1.0 O A:HOH405 3.9 18.8 1.0 ND1 A:HIS24 4.2 33.2 1.0 CB A:ASP19 4.2 32.7 1.0 CA A:CA303 4.2 27.0 1.0 OD1 A:ASP10 4.2 27.1 1.0 OG A:SER34 4.3 27.8 1.0 CG A:HIS24 4.3 31.4 1.0 O A:VAL32 4.5 24.9 1.0 CA A:ASP19 4.5 33.5 1.0 CG A:GLU8 4.7 24.4 1.0 CD A:PRO20 4.9 30.9 1.0

Manganese binding site 2 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn302 b:35.4 occ:1.00 O B:HOH404 2.1 24.7 1.0 OE2 B:GLU8 2.2 30.6 1.0 OD2 B:ASP10 2.2 35.5 1.0 O B:HOH405 2.2 27.5 1.0 OD1 B:ASP19 2.3 28.0 1.0 NE2 B:HIS24 2.3 27.6 1.0 CE1 B:HIS24 3.0 27.5 1.0 CD B:GLU8 3.2 29.3 1.0 CG B:ASP19 3.2 28.3 1.0 CG B:ASP10 3.3 32.7 1.0 CD2 B:HIS24 3.5 28.6 1.0 OE1 B:GLU8 3.6 28.9 1.0 OD2 B:ASP19 3.6 27.9 1.0 CB B:ASP10 3.7 29.8 1.0 O B:HOH406 3.9 32.5 1.0 OG B:SER34 4.1 38.5 1.0 CA B:CA303 4.2 33.9 1.0 ND1 B:HIS24 4.3 26.8 1.0 OD1 B:ASP10 4.3 34.4 1.0 CG B:GLU8 4.4 26.0 1.0 CB B:ASP19 4.5 30.3 1.0 CG B:HIS24 4.5 27.6 1.0 O B:VAL32 4.7 33.1 1.0 CA B:ASP19 4.7 32.6 1.0 CD B:PRO20 4.9 34.9 1.0

Manganese binding site 3 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn302 b:29.1 occ:1.00 O C:HOH405 2.0 33.5 1.0 OD1 C:ASP19 2.1 23.6 1.0 OD2 C:ASP10 2.2 27.8 1.0 NE2 C:HIS24 2.2 23.7 1.0 OE2 C:GLU8 2.3 27.8 1.0 O C:HOH406 2.4 31.0 1.0 CG C:ASP19 3.0 27.4 1.0 CE1 C:HIS24 3.1 23.2 1.0 CG C:ASP10 3.2 27.7 1.0 CD C:GLU8 3.3 29.7 1.0 CD2 C:HIS24 3.4 22.4 1.0 OD2 C:ASP19 3.4 26.0 1.0 OE1 C:GLU8 3.6 28.8 1.0 CB C:ASP10 3.6 24.2 1.0 O C:HOH407 3.9 22.4 1.0 CA C:CA303 4.1 28.0 1.0 OG C:SER34 4.2 30.4 1.0 CB C:ASP19 4.3 27.7 1.0 ND1 C:HIS24 4.3 22.6 1.0 OD1 C:ASP10 4.3 27.9 1.0 CG C:HIS24 4.4 22.6 1.0 CA C:ASP19 4.6 29.8 1.0 O C:VAL32 4.6 25.3 1.0 CG C:GLU8 4.6 30.3 1.0

Manganese binding site 4 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn302 b:34.6 occ:1.00 NE2 D:HIS24 2.1 27.6 1.0 OE2 D:GLU8 2.2 26.8 1.0 OD1 D:ASP19 2.2 34.6 1.0 O D:HOH401 2.3 22.5 1.0 OD2 D:ASP10 2.3 31.5 1.0 CE1 D:HIS24 2.9 28.3 1.0 CG D:ASP19 3.1 33.7 1.0 CD D:GLU8 3.2 28.2 1.0 CG D:ASP10 3.3 34.2 1.0 CD2 D:HIS24 3.4 26.5 1.0 OD2 D:ASP19 3.4 29.1 1.0 OE1 D:GLU8 3.6 29.6 1.0 CB D:ASP10 3.6 29.7 1.0 O D:HOH402 3.9 27.0 1.0 ND1 D:HIS24 4.1 27.9 1.0 CA D:CA303 4.2 30.6 1.0 OG D:SER34 4.2 37.1 1.0 CB D:ASP19 4.3 32.7 1.0 OD1 D:ASP10 4.4 35.1 1.0 CG D:HIS24 4.4 28.4 1.0 CG D:GLU8 4.6 24.9 1.0 O D:VAL32 4.6 27.5 1.0 CA D:ASP19 4.7 32.7 1.0 CD D:PRO20 5.0 31.2 1.0

F.Sakai, F.S.Weiss, G.Chen. Structure of Cona/RH3GLU Complex To Be Published.