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Manganese in PDB 4oic: Crystal Structrual of A Soluble Protein

Enzymatic activity of Crystal Structrual of A Soluble Protein

All present enzymatic activity of Crystal Structrual of A Soluble Protein:
3.1.3.16;

Protein crystallography data

The structure of Crystal Structrual of A Soluble Protein, PDB code: 4oic was solved by Y.He, Q.Hao, W.Li, C.Yan, N.Yan, P.Yin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.74 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.190, 43.522, 73.994, 90.00, 92.53, 90.00
R / Rfree (%) 17 / 20.1

Other elements in 4oic:

The structure of Crystal Structrual of A Soluble Protein also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structrual of A Soluble Protein (pdb code 4oic). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structrual of A Soluble Protein, PDB code: 4oic:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 4oic

Go back to Manganese Binding Sites List in 4oic
Manganese binding site 1 out of 4 in the Crystal Structrual of A Soluble Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structrual of A Soluble Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn501

b:20.2
occ:1.00
OD1 B:ASP386 2.3 13.0 1.0
OD2 B:ASP448 2.4 12.7 1.0
O B:HOH603 2.4 11.1 1.0
OD2 B:ASP205 2.5 12.0 1.0
O B:HOH647 2.5 20.3 1.0
O B:HOH640 2.5 28.1 1.0
O B:HOH605 2.5 9.1 1.0
CG B:ASP205 3.2 9.6 1.0
OD1 B:ASP205 3.2 10.4 1.0
CG B:ASP448 3.3 17.2 1.0
CG B:ASP386 3.4 15.8 1.0
OD1 B:ASP448 3.6 16.9 1.0
OD2 B:ASP386 3.8 13.4 1.0
MN B:MN502 3.8 20.4 1.0
O B:HOH604 4.0 23.4 1.0
O B:HOH612 4.3 8.6 1.0
N B:GLY387 4.3 13.6 1.0
O B:HOH616 4.4 9.3 1.0
O B:HOH659 4.5 25.8 1.0
O B:HOH632 4.6 26.4 1.0
O B:HOH633 4.6 21.7 1.0
O B:HOH601 4.6 12.7 1.0
N B:ASP386 4.6 10.0 1.0
CB B:ASP205 4.7 10.5 1.0
CB B:ASP448 4.7 11.4 1.0
CB B:ASP386 4.7 13.4 1.0
O B:ASN449 4.7 12.0 1.0
C B:ASP386 4.8 12.1 1.0
OD1 B:ASP164 4.8 13.8 1.0
CB B:SER385 4.9 10.1 1.0
CA B:ASP386 4.9 10.3 1.0

Manganese binding site 2 out of 4 in 4oic

Go back to Manganese Binding Sites List in 4oic
Manganese binding site 2 out of 4 in the Crystal Structrual of A Soluble Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structrual of A Soluble Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn502

b:20.4
occ:1.00
O B:GLY206 2.3 12.4 1.0
O B:HOH604 2.3 23.4 1.0
O B:HOH601 2.3 12.7 1.0
OD1 B:ASP205 2.4 10.4 1.0
O B:HOH603 2.5 11.1 1.0
O B:HOH602 2.5 12.0 0.9
C B:GLY206 3.4 14.3 1.0
CG B:ASP205 3.6 9.6 1.0
O B:HOH640 3.8 28.1 1.0
MN B:MN501 3.8 20.2 1.0
N B:GLY206 4.0 14.2 1.0
C B:ASP205 4.2 10.5 1.0
OD2 B:ASP205 4.2 12.0 1.0
O B:HOH666 4.2 16.3 1.0
O B:HOH632 4.3 26.4 1.0
CA B:GLY206 4.3 12.6 1.0
OD1 B:ASP164 4.3 13.8 1.0
O B:HOH605 4.3 9.1 1.0
OE1 B:GLU163 4.4 15.1 1.0
N B:HIS207 4.4 14.4 1.0
CA B:HIS207 4.5 16.5 1.0
CB B:GLU163 4.5 15.4 1.0
OD1 B:ASN449 4.6 14.2 1.0
CB B:HIS207 4.6 15.8 1.0
O B:ASP205 4.6 9.6 1.0
OD1 B:ASP448 4.7 16.9 1.0
CB B:ASP205 4.7 10.5 1.0
CA B:ASP205 4.8 9.3 1.0
O B:GLU163 4.9 14.6 1.0
NH1 B:ARG159 4.9 31.4 1.0
O B:HOH654 5.0 18.8 1.0

Manganese binding site 3 out of 4 in 4oic

Go back to Manganese Binding Sites List in 4oic
Manganese binding site 3 out of 4 in the Crystal Structrual of A Soluble Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structrual of A Soluble Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn503

b:28.5
occ:1.00
OD2 B:ASP386 2.4 13.4 1.0
O B:HOH607 2.5 24.8 0.9
O B:HOH606 2.5 20.6 1.0
O B:HOH675 2.5 20.3 0.9
OD2 B:ASP390 2.5 14.5 1.0
O B:HOH608 2.5 20.3 1.0
OD1 B:ASP390 2.6 14.6 1.0
CG B:ASP390 2.9 16.5 1.0
CG B:ASP386 3.4 15.8 1.0
CB B:ASP386 3.8 13.4 1.0
O B:HOH659 4.0 25.8 1.0
CB B:ASP390 4.4 14.0 1.0
O B:HOH816 4.4 23.2 1.0
O B:HOH647 4.4 20.3 1.0
O B:HOH739 4.4 16.3 0.9
OD1 B:ASP386 4.4 13.0 1.0
O B:HOH688 4.4 25.6 1.0
O B:HOH616 4.5 9.3 1.0
O B:HOH623 4.7 18.7 1.0
OD2 B:ASP300 4.8 15.5 1.0
O B:HOH752 4.8 43.5 1.0
O B:ASP386 4.9 12.2 1.0
O B:HOH761 4.9 44.6 1.0
O B:HOH748 4.9 22.1 0.8
O B:HOH868 5.0 54.0 1.0

Manganese binding site 4 out of 4 in 4oic

Go back to Manganese Binding Sites List in 4oic
Manganese binding site 4 out of 4 in the Crystal Structrual of A Soluble Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structrual of A Soluble Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn504

b:21.5
occ:0.35
O B:HOH614 2.4 17.9 1.0
OD2 B:ASP324 2.5 18.6 1.0
O B:HOH615 2.5 12.9 0.7
CG B:ASP324 3.6 19.6 1.0
CB B:ASP324 4.0 18.0 1.0
NH2 B:ARG322 4.0 20.4 1.0
OE1 B:GLU368 4.0 23.3 1.0
O B:HOH661 4.2 19.0 1.0
O B:HOH867 4.6 42.1 1.0
OD1 B:ASP324 4.6 21.4 1.0
CD B:GLU368 4.9 21.7 1.0
OE2 B:GLU368 4.9 18.5 1.0

Reference:

Y.He, Q.Hao, W.Li, C.Yan, N.Yan, P.Yin. Identification and Characterization of Aba Receptors in Oryza Sativa Plos One V. 9 95246 2014.
ISSN: ESSN 1932-6203
PubMed: 24743650
DOI: 10.1371/JOURNAL.PONE.0095246
Page generated: Tue Dec 15 04:25:49 2020

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