Atomistry » Manganese » PDB 4mu4-4nx7 » 4nrp
Atomistry »
  Manganese »
    PDB 4mu4-4nx7 »
      4nrp »

Manganese in PDB 4nrp: Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine

Protein crystallography data

The structure of Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine, PDB code: 4nrp was solved by C.Feng, Z.Chen, Y.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.555, 56.555, 143.870, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine (pdb code 4nrp). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine, PDB code: 4nrp:

Manganese binding site 1 out of 1 in 4nrp

Go back to Manganese Binding Sites List in 4nrp
Manganese binding site 1 out of 1 in the Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human ALKBH5 in Complex with N-Oxalylglycine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:12.8
occ:1.00
O2' A:OGA302 2.1 16.7 1.0
NE2 A:HIS204 2.2 13.6 1.0
NE2 A:HIS266 2.2 13.7 1.0
OD1 A:ASP206 2.2 12.6 1.0
O2 A:OGA302 2.2 16.4 1.0
C2 A:OGA302 2.8 19.2 1.0
C1 A:OGA302 2.9 18.9 1.0
CE1 A:HIS204 3.1 14.8 1.0
CE1 A:HIS266 3.1 14.6 1.0
CD2 A:HIS266 3.1 14.1 1.0
CD2 A:HIS204 3.2 13.7 1.0
CG A:ASP206 3.2 12.5 1.0
OD2 A:ASP206 3.5 12.7 1.0
N1 A:OGA302 4.1 23.5 1.0
O1 A:OGA302 4.1 21.6 1.0
O A:HOH436 4.2 33.0 1.0
ND1 A:HIS266 4.3 14.4 1.0
ND1 A:HIS204 4.3 13.7 1.0
CG A:HIS266 4.3 14.5 1.0
CG A:HIS204 4.3 13.7 1.0
CB A:ASP206 4.6 13.1 1.0
C4 A:OGA302 4.7 25.2 1.0
N A:ASP206 4.8 13.1 1.0
CA A:ASP206 4.9 13.8 1.0
NH1 A:ARG283 5.0 16.1 1.0

Reference:

C.Feng, Y.Liu, G.Wang, Z.Deng, Q.Zhang, W.Wu, Y.Tong, C.Cheng, Z.Chen. Crystal Structures of Human Rna Demethylase ALKBH5 Reveal Basis For Substrate Recognition J.Biol.Chem. 2014.
ISSN: ESSN 1083-351X
DOI: 10.1074/JBC.M113.546168
Page generated: Sat Oct 5 20:35:30 2024

Last articles

As in 1F0J
As in 1FF3
As in 1FOJ
As in 1FOI
As in 1FE8
As in 1F35
As in 1EQZ
As in 1ED6
As in 1ED5
As in 1DVA
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy