Atomistry » Manganese » PDB 4mu4-4nx7 » 4nhx
Atomistry »
  Manganese »
    PDB 4mu4-4nx7 »
      4nhx »

Manganese in PDB 4nhx: Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog)

Protein crystallography data

The structure of Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog), PDB code: 4nhx was solved by S.Horita, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.24 / 2.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.401, 64.401, 232.041, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 21.5

Other elements in 4nhx:

The structure of Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog) (pdb code 4nhx). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog), PDB code: 4nhx:

Manganese binding site 1 out of 1 in 4nhx

Go back to Manganese Binding Sites List in 4nhx
Manganese binding site 1 out of 1 in the Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human OGFOD1, 2-Oxoglutarate and Iron-Dependent Oxygenase Domain Containing 1, in Complex with N-Oxalylglycine (Nog) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:31.9
occ:1.00
NE2 A:HIS218 2.1 28.7 1.0
OD1 A:ASP157 2.1 35.0 1.0
O2 A:OGA603 2.2 36.3 1.0
O2' A:OGA603 2.2 34.0 1.0
O A:HOH841 2.2 34.7 1.0
NE2 A:HIS155 2.2 36.2 1.0
C2 A:OGA603 2.9 34.3 1.0
C1 A:OGA603 2.9 36.6 1.0
CG A:ASP157 3.0 38.7 1.0
CE1 A:HIS218 3.0 31.4 1.0
CE1 A:HIS155 3.0 37.0 1.0
OD2 A:ASP157 3.2 39.1 1.0
CD2 A:HIS218 3.2 31.1 1.0
CD2 A:HIS155 3.3 35.7 1.0
O2 A:GOL604 3.8 67.3 1.0
O1 A:OGA603 4.1 38.4 1.0
ND1 A:HIS218 4.1 32.1 1.0
ND1 A:HIS155 4.2 36.8 1.0
N1 A:OGA603 4.2 35.9 1.0
CG A:HIS218 4.3 30.0 1.0
CG A:HIS155 4.3 35.6 1.0
CB A:ASP157 4.3 38.7 1.0
CZ2 A:TRP236 4.5 39.1 1.0
CD2 A:LEU152 4.6 34.8 1.0
C2 A:GOL604 4.7 69.9 1.0
CZ A:PHE210 4.8 37.9 1.0
CA A:ASP157 4.8 38.4 1.0
O A:HOH840 4.8 37.9 1.0
C4 A:OGA603 4.9 35.0 1.0
N A:ASP157 4.9 38.7 1.0

Reference:

S.Horita, S.Horita, M.A.Mcdonough, C.J.Schofield. N/A N/A.
Page generated: Sat Oct 5 20:32:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy