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Manganese in PDB 4nhm: Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9)

Protein crystallography data

The structure of Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9), PDB code: 4nhm was solved by J.S.Scotti, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.94 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.419, 67.564, 71.495, 90.00, 105.31, 90.00
R / Rfree (%) 14.5 / 17

Other elements in 4nhm:

The structure of Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9) (pdb code 4nhm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9), PDB code: 4nhm:

Manganese binding site 1 out of 1 in 4nhm

Go back to Manganese Binding Sites List in 4nhm
Manganese binding site 1 out of 1 in the Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of TPA1P From Saccharomyces Cerevisiae, Termination and Polyadenylation Protein 1, in Complex with N-[(1-Chloro-4- Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (IOX3/UN9) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn702

b:23.5
occ:1.00
O13 A:UN9701 2.1 28.4 1.0
OD2 A:ASP161 2.1 27.0 1.0
NE2 A:HIS227 2.2 25.2 1.0
NE2 A:HIS159 2.2 26.1 1.0
O A:HOH1325 2.2 32.0 1.0
N8 A:UN9701 2.2 27.5 1.0
C12 A:UN9701 2.9 26.2 1.0
C9 A:UN9701 3.0 27.5 1.0
CG A:ASP161 3.0 28.9 1.0
CE1 A:HIS159 3.1 25.0 1.0
CE1 A:HIS227 3.1 25.3 1.0
CD2 A:HIS159 3.2 25.0 1.0
CD2 A:HIS227 3.2 24.9 1.0
C7 A:UN9701 3.2 30.6 1.0
OD1 A:ASP161 3.2 35.3 1.0
CL1 A:UN9701 3.5 49.5 1.0
ND1 A:HIS159 4.2 25.8 1.0
N14 A:UN9701 4.2 25.4 1.0
OE1 A:GLN242 4.2 46.1 0.5
ND1 A:HIS227 4.3 23.6 1.0
CG A:HIS159 4.3 25.4 1.0
CG A:HIS227 4.3 21.9 1.0
C10 A:UN9701 4.4 33.3 1.0
CB A:ASP161 4.5 27.5 1.0
C2 A:UN9701 4.5 35.3 1.0
CD2 A:LEU156 4.7 27.1 1.0
CD A:GLN242 4.9 44.4 0.5
C15 A:UN9701 4.9 23.9 1.0
CZ A:PHE218 5.0 28.9 1.0
CA A:ASP161 5.0 27.4 1.0
C3 A:UN9701 5.0 39.5 1.0

Reference:

J.S.Scotti, J.S.Scotti, M.A.Mcdonough, C.J.Schofield. N/A N/A.
Page generated: Sat Oct 5 20:32:30 2024

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