Manganese in PDB 4kmf: Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna

The structure of Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna, PDB code: 4kmf was solved by D.Kim, K.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.46 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	55.367, 49.471, 29.585, 90.00, 97.22, 90.00
R / Rfree (%)	17 / 22.7

The binding sites of Manganese atom in the Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna (pdb code 4kmf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna, PDB code: 4kmf:

Manganese binding site 1 out of 1 in the Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Zalpha Domain From Carassius Auratus Pkz in Complex with Z-Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn101 b:22.4 occ:1.00 O B:HOH212 2.1 31.2 1.0 OP2 B:DC63 2.1 21.4 1.0 O B:HOH207 2.1 25.1 1.0 O B:HOH206 2.2 24.6 1.0 O A:HOH102 2.3 23.4 1.0 N7 B:DG64 2.3 17.6 1.0 C8 B:DG64 3.1 16.7 1.0 P B:DC63 3.4 21.9 1.0 C5 B:DG64 3.5 18.3 1.0 OP1 B:DC63 3.9 21.6 1.0 O6 B:DG64 3.9 21.0 1.0 C6 B:DG64 4.1 18.4 1.0 O5' B:DC63 4.1 18.7 1.0 NZ A:LYS56 4.2 23.2 1.0 O B:HOH208 4.2 23.1 1.0 N9 B:DG64 4.3 17.6 1.0 O B:HOH221 4.4 42.4 1.0 C4 B:DG64 4.5 16.9 1.0 O3' B:DT62 4.6 22.5 1.0

D.Kim, J.Hur, K.Park, S.Bae, D.Shin, S.C.Ha, H.Y.Hwang, S.Hohng, J.H.Lee, S.Lee, Y.G.Kim, K.K.Kim. Distinct Z-Dna Binding Mode of A Pkr-Like Protein Kinase Containing A Z-Dna Binding Domain (Pkz). Nucleic Acids Res. V. 42 5937 2014.
ISSN: ISSN 0305-1048
PubMed: 24682817
DOI: 10.1093/NAR/GKU189