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Manganese in PDB 4jh7: Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product

Protein crystallography data

The structure of Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product, PDB code: 4jh7 was solved by M.K.Thompson, J.Harp, M.E.Keithly, K.Jagessar, P.D.Cook, R.N.Armstrong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.95 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.292, 68.309, 70.183, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 18.6

Other elements in 4jh7:

The structure of Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product (pdb code 4jh7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product, PDB code: 4jh7:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 4jh7

Go back to Manganese Binding Sites List in 4jh7
Manganese binding site 1 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:9.3
occ:1.00
OAF A:1KM204 2.0 14.6 1.0
OE1 A:GLU115 2.1 9.4 1.0
NE2 A:HIS66 2.2 9.0 1.0
NE2 B:HIS7 2.2 8.5 1.0
OAE A:1KM204 2.4 15.2 1.0
CE1 A:HIS66 3.1 9.1 1.0
CE1 B:HIS7 3.1 8.9 1.0
CD A:GLU115 3.2 9.4 1.0
CD2 A:HIS66 3.2 8.8 1.0
CD2 B:HIS7 3.2 7.6 1.0
PAO A:1KM204 3.4 16.1 1.0
CAL A:1KM204 3.4 17.0 1.0
OE2 A:GLU115 3.6 10.7 1.0
CAA A:1KM204 3.6 15.7 1.0
CAN A:1KM204 3.8 16.0 1.0
OH A:TYR105 4.0 13.1 1.0
O A:HOH329 4.1 15.7 1.0
CE2 A:TYR105 4.1 10.9 1.0
OAG A:1KM204 4.2 17.4 1.0
ND1 A:HIS66 4.3 9.5 1.0
ND1 B:HIS7 4.3 8.9 1.0
CG A:HIS66 4.3 6.8 1.0
CG B:HIS7 4.4 7.6 1.0
CG A:GLU115 4.5 9.4 1.0
OAH A:1KM204 4.5 15.1 1.0
CZ A:TYR105 4.5 12.3 1.0
CB B:CYS9 4.6 9.3 1.0
CB A:ALA68 4.6 8.9 1.0
CB A:GLU115 4.7 8.8 1.0
SG B:CYS9 5.0 12.3 1.0

Manganese binding site 2 out of 2 in 4jh7

Go back to Manganese Binding Sites List in 4jh7
Manganese binding site 2 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Fosb From Bacillus Cereus with Manganese and L- Cysteine-Fosfomycin Product within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn201

b:8.3
occ:1.00
OAH B:1KM203 2.0 13.8 1.0
OE1 B:GLU115 2.1 7.2 1.0
NE2 B:HIS66 2.2 7.6 1.0
NE2 A:HIS7 2.2 7.8 1.0
OAE B:1KM203 2.3 14.8 1.0
CE1 B:HIS66 3.1 8.9 1.0
CE1 A:HIS7 3.1 8.4 1.0
CD B:GLU115 3.2 7.4 1.0
CD2 A:HIS7 3.2 6.7 1.0
CD2 B:HIS66 3.2 8.5 1.0
CAL B:1KM203 3.3 16.5 1.0
PAO B:1KM203 3.4 14.4 1.0
OE2 B:GLU115 3.6 8.9 1.0
CAA B:1KM203 3.6 14.2 1.0
CAN B:1KM203 3.8 13.3 1.0
O B:HOH336 4.0 12.5 1.0
OH B:TYR105 4.0 12.0 1.0
OAG B:1KM203 4.2 13.8 1.0
CE1 B:TYR105 4.2 9.7 1.0
ND1 B:HIS66 4.3 8.1 1.0
ND1 A:HIS7 4.3 6.9 1.0
CG B:HIS66 4.3 6.2 1.0
CG A:HIS7 4.3 6.0 1.0
CG B:GLU115 4.5 6.0 1.0
CB A:CYS9 4.5 9.7 1.0
OAF B:1KM203 4.5 14.5 1.0
CZ B:TYR105 4.6 9.8 1.0
CB B:ALA68 4.6 8.5 1.0
CB B:GLU115 4.7 5.9 1.0
SG A:CYS9 4.9 12.5 1.0

Reference:

M.K.Thompson, M.E.Keithly, J.Harp, P.D.Cook, K.L.Jagessar, G.A.Sulikowski, R.N.Armstrong. Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred By Fosb From Bacillus Cereus. Biochemistry V. 52 7350 2013.
ISSN: ISSN 0006-2960
PubMed: 24004181
DOI: 10.1021/BI4009648
Page generated: Sat Oct 5 19:58:38 2024

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