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Manganese in PDB 4iz9: Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese

Enzymatic activity of Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese

All present enzymatic activity of Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese:
2.7.2.1;

Protein crystallography data

The structure of Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese, PDB code: 4iz9 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.39 / 1.98
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.770, 95.770, 141.230, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese (pdb code 4iz9). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese, PDB code: 4iz9:

Manganese binding site 1 out of 1 in 4iz9

Go back to Manganese Binding Sites List in 4iz9
Manganese binding site 1 out of 1 in the Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of An Acetate Kinase From Mycobacterium Avium Bound to An Unknown Acid-Apcpp Conjugate and Manganese within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:62.8
occ:1.00
 O A:HOH638 1.8 44.4 1.0
O1B A:APC402 2.2 48.7 0.5
O1B A:APC402 2.4 50.7 0.5
OE1 A:GLU374 2.5 44.8 1.0
O A:HOH639 2.6 37.6 1.0
O4 A:SIN403 2.7 42.5 0.5
O4 A:SIN403 2.8 35.6 0.5
O A:HOH637 3.0 40.3 1.0
O3G A:APC402 3.1 51.4 0.5
PB A:APC402 3.2 47.5 0.5
CD A:GLU374 3.4 38.8 1.0
O2B A:APC402 3.4 46.0 0.5
C4 A:SIN403 3.6 35.5 0.5
OE2 A:GLU374 3.6 37.8 1.0
PB A:APC402 3.7 54.1 0.5
O3 A:SIN403 3.7 37.7 0.5
C4 A:SIN403 3.9 39.5 0.5
O3B A:APC402 4.1 52.6 0.5
O A:HOH539 4.1 31.6 1.0
PG A:APC402 4.2 55.6 0.5
O3B A:APC402 4.3 47.8 0.5
O1A A:APC402 4.3 34.4 0.5
CE1 A:HIS198 4.3 21.4 1.0
O2 A:SIN403 4.3 42.9 0.5
NE2 A:HIS198 4.4 21.2 1.0
O1 A:SIN403 4.4 37.5 0.5
O1A A:APC402 4.4 38.0 0.5
O2B A:APC402 4.4 55.4 0.5
C3A A:APC402 4.5 43.2 0.5
O3G A:APC402 4.7 48.1 0.5
O3 A:SIN403 4.7 43.4 0.5
CG A:GLU374 4.7 34.2 1.0
C3 A:SIN403 4.7 40.1 0.5
NH2 A:ARG81 4.7 36.0 0.5
C1 A:SIN403 4.8 41.9 0.5
PG A:APC402 4.8 48.9 0.5
C3 A:SIN403 4.9 36.8 0.5
PA A:APC402 5.0 40.4 0.5

Reference:

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003
Page generated: Tue Dec 15 04:23:00 2020

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