Manganese in PDB 4il6: Structure of Sr-Substituted Photosystem II
Enzymatic activity of Structure of Sr-Substituted Photosystem II
All present enzymatic activity of Structure of Sr-Substituted Photosystem II:
1.10.3.9;
Protein crystallography data
The structure of Structure of Sr-Substituted Photosystem II, PDB code: 4il6
was solved by
F.H.M.Koua,
Y.Umena,
K.Kawakami,
N.Kamiya,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.96 /
2.10
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
121.860,
228.790,
285.760,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.6 /
20.5
|
Other elements in 4il6:
The structure of Structure of Sr-Substituted Photosystem II also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Structure of Sr-Substituted Photosystem II
(pdb code 4il6). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Structure of Sr-Substituted Photosystem II, PDB code: 4il6:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 1 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1001
b:24.9
occ:1.00
|
MN1
|
A:OER1001
|
0.0
|
24.9
|
1.0
|
|
OE2
|
A:GLU189
|
1.8
|
28.7
|
1.0
|
|
O3
|
A:OER1001
|
1.9
|
25.6
|
1.0
|
|
O1
|
A:OER1001
|
2.1
|
26.0
|
1.0
|
|
OD2
|
A:ASP342
|
2.1
|
25.3
|
1.0
|
|
NE2
|
A:HIS332
|
2.2
|
20.6
|
1.0
|
|
O5
|
A:OER1001
|
2.6
|
27.3
|
1.0
|
|
MN2
|
A:OER1001
|
2.8
|
25.5
|
1.0
|
|
CD
|
A:GLU189
|
2.9
|
27.4
|
1.0
|
|
CG
|
A:ASP342
|
3.1
|
25.3
|
1.0
|
|
CD2
|
A:HIS332
|
3.1
|
20.4
|
1.0
|
|
CE1
|
A:HIS332
|
3.2
|
21.6
|
1.0
|
|
O2
|
A:OER1001
|
3.2
|
25.6
|
1.0
|
|
MN3
|
A:OER1001
|
3.3
|
26.9
|
1.0
|
|
OD1
|
A:ASP342
|
3.4
|
26.2
|
1.0
|
|
OE1
|
A:GLU189
|
3.4
|
27.2
|
1.0
|
|
SR1
|
A:OER1001
|
3.6
|
27.0
|
0.7
|
|
NE2
|
A:HIS337
|
4.0
|
23.8
|
1.0
|
|
O
|
A:HOH1199
|
4.0
|
42.9
|
1.0
|
|
OE1
|
A:GLU333
|
4.0
|
21.4
|
1.0
|
|
CG
|
A:GLU189
|
4.1
|
26.6
|
1.0
|
|
ND1
|
A:HIS332
|
4.3
|
20.8
|
1.0
|
|
CG
|
A:HIS332
|
4.3
|
21.1
|
1.0
|
|
CB
|
A:ASP342
|
4.4
|
25.5
|
1.0
|
|
OE1
|
C:GLU354
|
4.5
|
25.8
|
1.0
|
|
CE1
|
A:HIS337
|
4.5
|
23.8
|
1.0
|
|
OXT
|
A:ALA344
|
4.5
|
28.8
|
1.0
|
|
CG1
|
A:VAL185
|
4.5
|
19.5
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
24.5
|
1.0
|
|
O4
|
A:OER1001
|
4.9
|
28.1
|
1.0
|
|
O
|
A:ALA344
|
4.9
|
28.5
|
1.0
|
|
CD
|
A:GLU333
|
4.9
|
21.7
|
1.0
|
|
Manganese binding site 2 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 2 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1001
b:25.5
occ:1.00
|
MN2
|
A:OER1001
|
0.0
|
25.5
|
1.0
|
|
O2
|
A:OER1001
|
1.8
|
25.6
|
1.0
|
|
O1
|
A:OER1001
|
1.9
|
26.0
|
1.0
|
|
OD1
|
A:ASP342
|
2.0
|
26.2
|
1.0
|
|
OXT
|
A:ALA344
|
2.0
|
28.8
|
1.0
|
|
O3
|
A:OER1001
|
2.0
|
25.6
|
1.0
|
|
OE1
|
C:GLU354
|
2.1
|
25.8
|
1.0
|
|
MN1
|
A:OER1001
|
2.8
|
24.9
|
1.0
|
|
CG
|
A:ASP342
|
2.9
|
25.3
|
1.0
|
|
MN3
|
A:OER1001
|
2.9
|
26.9
|
1.0
|
|
C
|
A:ALA344
|
3.0
|
28.7
|
1.0
|
|
OD2
|
A:ASP342
|
3.1
|
25.3
|
1.0
|
|
CD
|
C:GLU354
|
3.1
|
24.6
|
1.0
|
|
OE2
|
C:GLU354
|
3.3
|
24.5
|
1.0
|
|
O
|
A:ALA344
|
3.3
|
28.5
|
1.0
|
|
SR1
|
A:OER1001
|
3.5
|
27.0
|
0.7
|
|
NE2
|
A:HIS337
|
3.7
|
23.8
|
1.0
|
|
O5
|
A:OER1001
|
3.9
|
27.3
|
1.0
|
|
O
|
C:HOH642
|
4.0
|
24.2
|
1.0
|
|
O
|
A:HOH1199
|
4.0
|
42.9
|
1.0
|
|
CA
|
A:ALA344
|
4.2
|
29.4
|
1.0
|
|
OE2
|
A:GLU189
|
4.3
|
28.7
|
1.0
|
|
N
|
A:ALA344
|
4.3
|
29.4
|
1.0
|
|
CB
|
A:ASP342
|
4.3
|
25.5
|
1.0
|
|
CD2
|
A:HIS337
|
4.3
|
24.0
|
1.0
|
|
O4
|
A:OER1001
|
4.4
|
28.1
|
1.0
|
|
CG
|
C:GLU354
|
4.4
|
25.2
|
1.0
|
|
NH2
|
C:ARG357
|
4.5
|
26.1
|
1.0
|
|
OE1
|
A:GLU333
|
4.6
|
21.4
|
1.0
|
|
NE2
|
A:HIS332
|
4.6
|
20.6
|
1.0
|
|
CA
|
A:ASP342
|
4.7
|
25.9
|
1.0
|
|
C
|
A:ASP342
|
4.8
|
26.7
|
1.0
|
|
CB
|
C:GLU354
|
4.9
|
24.4
|
1.0
|
|
CE1
|
A:HIS337
|
4.9
|
23.8
|
1.0
|
|
NH1
|
C:ARG357
|
4.9
|
24.9
|
1.0
|
|
CD
|
A:GLU189
|
5.0
|
27.4
|
1.0
|
|
Manganese binding site 3 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 3 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1001
b:26.9
occ:1.00
|
MN3
|
A:OER1001
|
0.0
|
26.9
|
1.0
|
|
O2
|
A:OER1001
|
1.7
|
25.6
|
1.0
|
|
O4
|
A:OER1001
|
1.7
|
28.1
|
1.0
|
|
O3
|
A:OER1001
|
2.0
|
25.6
|
1.0
|
|
OE1
|
A:GLU333
|
2.1
|
21.4
|
1.0
|
|
OE2
|
C:GLU354
|
2.2
|
24.5
|
1.0
|
|
O5
|
A:OER1001
|
2.5
|
27.3
|
1.0
|
|
MN4
|
A:OER1001
|
2.9
|
28.7
|
1.0
|
|
MN2
|
A:OER1001
|
2.9
|
25.5
|
1.0
|
|
CD
|
A:GLU333
|
3.0
|
21.7
|
1.0
|
|
CD
|
C:GLU354
|
3.1
|
24.6
|
1.0
|
|
OE2
|
A:GLU333
|
3.3
|
22.8
|
1.0
|
|
MN1
|
A:OER1001
|
3.3
|
24.9
|
1.0
|
|
OE1
|
C:GLU354
|
3.4
|
25.8
|
1.0
|
|
SR1
|
A:OER1001
|
3.6
|
27.0
|
0.7
|
|
O1
|
A:OER1001
|
3.7
|
26.0
|
1.0
|
|
NH2
|
C:ARG357
|
3.8
|
26.1
|
1.0
|
|
O
|
C:HOH736
|
4.0
|
40.2
|
1.0
|
|
OD2
|
A:ASP170
|
4.1
|
25.5
|
1.0
|
|
NE2
|
A:HIS337
|
4.1
|
23.8
|
1.0
|
|
O
|
A:HOH1157
|
4.2
|
29.1
|
1.0
|
|
NE2
|
A:HIS332
|
4.3
|
20.6
|
1.0
|
|
OD1
|
A:ASP170
|
4.4
|
25.4
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
28.8
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
21.8
|
1.0
|
|
O
|
A:HOH1166
|
4.5
|
30.6
|
1.0
|
|
CD2
|
A:HIS332
|
4.5
|
20.4
|
1.0
|
|
CG
|
C:GLU354
|
4.5
|
25.2
|
1.0
|
|
O
|
A:HOH1139
|
4.6
|
25.2
|
1.0
|
|
CG
|
A:ASP170
|
4.7
|
25.0
|
1.0
|
|
OD1
|
A:ASP342
|
4.7
|
26.2
|
1.0
|
|
CE1
|
A:HIS337
|
4.7
|
23.8
|
1.0
|
|
OD2
|
A:ASP342
|
4.8
|
25.3
|
1.0
|
|
O
|
A:ALA344
|
4.8
|
28.5
|
1.0
|
|
CB
|
A:GLU333
|
4.8
|
21.5
|
1.0
|
|
OE2
|
A:GLU189
|
4.9
|
28.7
|
1.0
|
|
CZ
|
C:ARG357
|
4.9
|
25.7
|
1.0
|
|
Manganese binding site 4 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 4 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1001
b:28.7
occ:1.00
|
MN4
|
A:OER1001
|
0.0
|
28.7
|
1.0
|
|
O4
|
A:OER1001
|
1.9
|
28.1
|
1.0
|
|
O
|
A:HOH1166
|
2.0
|
30.6
|
1.0
|
|
O
|
A:HOH1139
|
2.1
|
25.2
|
1.0
|
|
OD2
|
A:ASP170
|
2.1
|
25.5
|
1.0
|
|
OE2
|
A:GLU333
|
2.2
|
22.8
|
1.0
|
|
O5
|
A:OER1001
|
2.6
|
27.3
|
1.0
|
|
MN3
|
A:OER1001
|
2.9
|
26.9
|
1.0
|
|
CD
|
A:GLU333
|
3.1
|
21.7
|
1.0
|
|
CG
|
A:ASP170
|
3.3
|
25.0
|
1.0
|
|
OE1
|
A:GLU333
|
3.3
|
21.4
|
1.0
|
|
OD1
|
A:ASP170
|
3.8
|
25.4
|
1.0
|
|
O
|
A:HOH1157
|
3.8
|
29.1
|
1.0
|
|
O2
|
A:OER1001
|
3.9
|
25.6
|
1.0
|
|
O
|
A:HOH1169
|
4.0
|
32.3
|
1.0
|
|
SR1
|
A:OER1001
|
4.0
|
27.0
|
0.7
|
|
O
|
A:HOH1155
|
4.0
|
29.3
|
1.0
|
|
OD1
|
A:ASP61
|
4.2
|
24.8
|
1.0
|
|
O
|
A:SER169
|
4.3
|
24.2
|
1.0
|
|
O
|
A:HOH1167
|
4.3
|
33.3
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
21.8
|
1.0
|
|
CB
|
A:ASP170
|
4.5
|
24.3
|
1.0
|
|
O3
|
A:OER1001
|
4.6
|
25.6
|
1.0
|
|
CA
|
A:ASP170
|
4.6
|
24.1
|
1.0
|
|
NH2
|
C:ARG357
|
4.6
|
26.1
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
24.5
|
1.0
|
|
O
|
A:HOH1143
|
4.7
|
26.4
|
1.0
|
|
C
|
A:SER169
|
4.9
|
23.8
|
1.0
|
|
N
|
A:ASP170
|
5.0
|
23.7
|
1.0
|
|
Manganese binding site 5 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 5 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn403
b:27.5
occ:1.00
|
MN1
|
a:OER403
|
0.0
|
27.5
|
1.0
|
|
OE2
|
a:GLU189
|
1.8
|
30.1
|
1.0
|
|
O1
|
a:OER403
|
1.9
|
28.0
|
1.0
|
|
O3
|
a:OER403
|
2.0
|
28.6
|
1.0
|
|
NE2
|
a:HIS332
|
2.1
|
27.9
|
1.0
|
|
OD2
|
a:ASP342
|
2.2
|
30.7
|
1.0
|
|
O5
|
a:OER403
|
2.7
|
29.3
|
1.0
|
|
MN2
|
a:OER403
|
2.7
|
28.5
|
1.0
|
|
CD
|
a:GLU189
|
2.9
|
30.4
|
1.0
|
|
CD2
|
a:HIS332
|
3.1
|
27.0
|
1.0
|
|
CG
|
a:ASP342
|
3.1
|
29.6
|
1.0
|
|
CE1
|
a:HIS332
|
3.1
|
26.8
|
1.0
|
|
O2
|
a:OER403
|
3.3
|
28.9
|
1.0
|
|
MN3
|
a:OER403
|
3.3
|
28.3
|
1.0
|
|
OD1
|
a:ASP342
|
3.3
|
29.1
|
1.0
|
|
OE1
|
a:GLU189
|
3.4
|
30.1
|
1.0
|
|
SR1
|
a:OER403
|
3.6
|
28.9
|
0.7
|
|
NE2
|
a:HIS337
|
4.0
|
28.3
|
1.0
|
|
OE1
|
a:GLU333
|
4.1
|
26.5
|
1.0
|
|
CG
|
a:GLU189
|
4.1
|
29.9
|
1.0
|
|
ND1
|
a:HIS332
|
4.2
|
26.1
|
1.0
|
|
CG
|
a:HIS332
|
4.3
|
26.6
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
31.6
|
1.0
|
|
CB
|
a:ASP342
|
4.5
|
29.2
|
1.0
|
|
OE1
|
c:GLU354
|
4.5
|
28.3
|
1.0
|
|
CG1
|
a:VAL185
|
4.5
|
23.2
|
1.0
|
|
CE1
|
a:HIS337
|
4.6
|
28.0
|
1.0
|
|
O
|
a:ALA344
|
4.8
|
33.5
|
1.0
|
|
OE2
|
c:GLU354
|
4.8
|
28.0
|
1.0
|
|
CD
|
a:GLU333
|
4.9
|
25.2
|
1.0
|
|
O4
|
a:OER403
|
5.0
|
29.6
|
1.0
|
|
C
|
a:ALA344
|
5.0
|
32.9
|
1.0
|
|
Manganese binding site 6 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 6 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn403
b:28.5
occ:1.00
|
MN2
|
a:OER403
|
0.0
|
28.5
|
1.0
|
|
O2
|
a:OER403
|
1.8
|
28.9
|
1.0
|
|
O1
|
a:OER403
|
1.9
|
28.0
|
1.0
|
|
OXT
|
a:ALA344
|
1.9
|
31.6
|
1.0
|
|
O3
|
a:OER403
|
2.0
|
28.6
|
1.0
|
|
OD1
|
a:ASP342
|
2.1
|
29.1
|
1.0
|
|
OE1
|
c:GLU354
|
2.2
|
28.3
|
1.0
|
|
MN1
|
a:OER403
|
2.7
|
27.5
|
1.0
|
|
C
|
a:ALA344
|
2.9
|
32.9
|
1.0
|
|
MN3
|
a:OER403
|
2.9
|
28.3
|
1.0
|
|
CG
|
a:ASP342
|
2.9
|
29.6
|
1.0
|
|
CD
|
c:GLU354
|
3.1
|
27.8
|
1.0
|
|
OD2
|
a:ASP342
|
3.1
|
30.7
|
1.0
|
|
O
|
a:ALA344
|
3.2
|
33.5
|
1.0
|
|
OE2
|
c:GLU354
|
3.4
|
28.0
|
1.0
|
|
SR1
|
a:OER403
|
3.5
|
28.9
|
0.7
|
|
O5
|
a:OER403
|
3.8
|
29.3
|
1.0
|
|
NE2
|
a:HIS337
|
3.9
|
28.3
|
1.0
|
|
O
|
c:HOH648
|
3.9
|
28.4
|
1.0
|
|
OE2
|
a:GLU189
|
4.2
|
30.1
|
1.0
|
|
CA
|
a:ALA344
|
4.2
|
32.9
|
1.0
|
|
N
|
a:ALA344
|
4.3
|
33.0
|
1.0
|
|
O4
|
a:OER403
|
4.3
|
29.6
|
1.0
|
|
CB
|
a:ASP342
|
4.4
|
29.2
|
1.0
|
|
CD2
|
a:HIS337
|
4.4
|
27.2
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
27.4
|
1.0
|
|
NE2
|
a:HIS332
|
4.5
|
27.9
|
1.0
|
|
OE1
|
a:GLU333
|
4.5
|
26.5
|
1.0
|
|
CA
|
a:ASP342
|
4.8
|
29.3
|
1.0
|
|
NH1
|
c:ARG357
|
4.8
|
30.7
|
1.0
|
|
NH2
|
c:ARG357
|
4.9
|
31.5
|
1.0
|
|
C
|
a:ASP342
|
4.9
|
29.9
|
1.0
|
|
OE1
|
a:GLU189
|
4.9
|
30.1
|
1.0
|
|
CD
|
a:GLU189
|
4.9
|
30.4
|
1.0
|
|
O
|
a:HOH514
|
4.9
|
31.6
|
1.0
|
|
CB
|
c:GLU354
|
4.9
|
26.5
|
1.0
|
|
Manganese binding site 7 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 7 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn403
b:28.3
occ:1.00
|
MN3
|
a:OER403
|
0.0
|
28.3
|
1.0
|
|
O2
|
a:OER403
|
1.7
|
28.9
|
1.0
|
|
O4
|
a:OER403
|
1.9
|
29.6
|
1.0
|
|
O3
|
a:OER403
|
1.9
|
28.6
|
1.0
|
|
OE1
|
a:GLU333
|
2.0
|
26.5
|
1.0
|
|
OE2
|
c:GLU354
|
2.2
|
28.0
|
1.0
|
|
O5
|
a:OER403
|
2.4
|
29.3
|
1.0
|
|
MN4
|
a:OER403
|
2.9
|
31.2
|
1.0
|
|
MN2
|
a:OER403
|
2.9
|
28.5
|
1.0
|
|
CD
|
a:GLU333
|
3.0
|
25.2
|
1.0
|
|
CD
|
c:GLU354
|
3.1
|
27.8
|
1.0
|
|
OE2
|
a:GLU333
|
3.2
|
26.1
|
1.0
|
|
MN1
|
a:OER403
|
3.3
|
27.5
|
1.0
|
|
OE1
|
c:GLU354
|
3.4
|
28.3
|
1.0
|
|
O1
|
a:OER403
|
3.6
|
28.0
|
1.0
|
|
SR1
|
a:OER403
|
3.6
|
28.9
|
0.7
|
|
O
|
c:HOH680
|
4.0
|
34.6
|
1.0
|
|
NH2
|
c:ARG357
|
4.1
|
31.5
|
1.0
|
|
NE2
|
a:HIS337
|
4.2
|
28.3
|
1.0
|
|
OD2
|
a:ASP170
|
4.2
|
29.8
|
1.0
|
|
NE2
|
a:HIS332
|
4.2
|
27.9
|
1.0
|
|
O
|
a:HOH552
|
4.3
|
28.2
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
24.7
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
31.6
|
1.0
|
|
CD2
|
a:HIS332
|
4.4
|
27.0
|
1.0
|
|
OD1
|
a:ASP170
|
4.5
|
29.9
|
1.0
|
|
O
|
a:HOH548
|
4.5
|
31.9
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
27.4
|
1.0
|
|
O
|
a:HOH530
|
4.6
|
31.0
|
1.0
|
|
OD1
|
a:ASP342
|
4.7
|
29.1
|
1.0
|
|
CB
|
a:GLU333
|
4.8
|
24.5
|
1.0
|
|
O
|
a:ALA344
|
4.8
|
33.5
|
1.0
|
|
CG
|
a:ASP170
|
4.8
|
29.2
|
1.0
|
|
CE1
|
a:HIS337
|
4.8
|
28.0
|
1.0
|
|
OD2
|
a:ASP342
|
4.9
|
30.7
|
1.0
|
|
OE2
|
a:GLU189
|
4.9
|
30.1
|
1.0
|
|
Manganese binding site 8 out
of 8 in 4il6
Go back to
Manganese Binding Sites List in 4il6
Manganese binding site 8 out
of 8 in the Structure of Sr-Substituted Photosystem II
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Structure of Sr-Substituted Photosystem II within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn403
b:31.2
occ:1.00
|
MN4
|
a:OER403
|
0.0
|
31.2
|
1.0
|
|
O4
|
a:OER403
|
1.9
|
29.6
|
1.0
|
|
O
|
a:HOH548
|
2.1
|
31.9
|
1.0
|
|
OD2
|
a:ASP170
|
2.1
|
29.8
|
1.0
|
|
O
|
a:HOH530
|
2.1
|
31.0
|
1.0
|
|
OE2
|
a:GLU333
|
2.1
|
26.1
|
1.0
|
|
O5
|
a:OER403
|
2.5
|
29.3
|
1.0
|
|
MN3
|
a:OER403
|
2.9
|
28.3
|
1.0
|
|
CD
|
a:GLU333
|
3.1
|
25.2
|
1.0
|
|
CG
|
a:ASP170
|
3.3
|
29.2
|
1.0
|
|
OE1
|
a:GLU333
|
3.3
|
26.5
|
1.0
|
|
O
|
a:HOH552
|
3.7
|
28.2
|
1.0
|
|
O2
|
a:OER403
|
3.8
|
28.9
|
1.0
|
|
OD1
|
a:ASP170
|
3.8
|
29.9
|
1.0
|
|
SR1
|
a:OER403
|
4.0
|
28.9
|
0.7
|
|
O
|
a:HOH585
|
4.0
|
30.5
|
1.0
|
|
O
|
a:HOH550
|
4.1
|
35.8
|
1.0
|
|
OD1
|
a:ASP61
|
4.1
|
28.2
|
1.0
|
|
O
|
a:HOH575
|
4.3
|
31.8
|
1.0
|
|
O
|
a:SER169
|
4.3
|
24.7
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
24.7
|
1.0
|
|
CB
|
a:ASP170
|
4.5
|
27.7
|
1.0
|
|
O3
|
a:OER403
|
4.5
|
28.6
|
1.0
|
|
CA
|
a:ASP170
|
4.6
|
27.0
|
1.0
|
|
NH2
|
c:ARG357
|
4.7
|
31.5
|
1.0
|
|
OE2
|
c:GLU354
|
4.7
|
28.0
|
1.0
|
|
O
|
d:HOH561
|
4.7
|
31.6
|
1.0
|
|
OG
|
a:SER169
|
4.9
|
25.5
|
1.0
|
|
C
|
a:SER169
|
4.9
|
25.4
|
1.0
|
|
O
|
a:HOH574
|
4.9
|
21.4
|
1.0
|
|
N
|
a:ASP170
|
5.0
|
26.0
|
1.0
|
|
CG
|
a:ASP61
|
5.0
|
27.4
|
1.0
|
|
Reference:
F.H.Koua,
Y.Umena,
K.Kawakami,
J.R.Shen.
Structure of Sr-Substituted Photosystem II at 2.1 A Resolution and Its Implications in the Mechanism of Water Oxidation Proc.Natl.Acad.Sci.Usa V. 110 3889 2013.
ISSN: ISSN 0027-8424
PubMed: 23426624
DOI: 10.1073/PNAS.1219922110
Page generated: Sat Oct 5 19:49:59 2024
|
