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Manganese in PDB 4h55: Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose

Protein crystallography data

The structure of Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose, PDB code: 4h55 was solved by E.Salviano, B.A.M.Rocha, B.S.Cavada, P.Delatorre, T.Santi-Gadelha, C.A.A.Gadelha, J.C.Silva-Filho, R.B.Nobrega, D.L.Farias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.39 / 2.15
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.240, 70.430, 97.570, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.7

Other elements in 4h55:

The structure of Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose (pdb code 4h55). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose, PDB code: 4h55:

Manganese binding site 1 out of 1 in 4h55

Go back to Manganese Binding Sites List in 4h55
Manganese binding site 1 out of 1 in the Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:21.7
occ:1.00
NE2 A:HIS24 2.0 20.9 1.0
OD2 A:ASP10 2.1 22.4 1.0
OE2 A:GLU8 2.1 15.0 1.0
OD1 A:ASP19 2.3 16.5 1.0
O A:HOH480 2.4 23.5 1.0
O A:HOH477 2.4 29.9 1.0
CE1 A:HIS24 2.9 18.5 1.0
CD2 A:HIS24 3.1 19.4 1.0
CD A:GLU8 3.1 12.2 1.0
CG A:ASP10 3.1 19.3 1.0
CG A:ASP19 3.1 21.5 1.0
OE1 A:GLU8 3.4 13.8 1.0
CB A:ASP10 3.5 17.0 1.0
OD2 A:ASP19 3.6 22.8 1.0
O A:HOH479 4.0 23.7 1.0
ND1 A:HIS24 4.1 15.8 1.0
CA A:CA301 4.1 28.4 1.0
CG A:HIS24 4.2 17.2 1.0
OD1 A:ASP10 4.2 21.4 1.0
CB A:ASP19 4.2 22.0 1.0
OG A:SER34 4.3 19.8 1.0
CG A:GLU8 4.4 13.1 1.0
O A:VAL32 4.6 22.8 1.0
CA A:ASP19 4.6 22.2 1.0

Reference:

E.Salviano, B.A.M.Rocha, B.S.Cavada, P.Delatorre, T.Santi-Gadelha, C.A.A.Gadelha, J.C.Silva-Filho, R.B.Nobrega, D.L.Farias. Crystal Structure of Canavalia Brasiliensis Seed Lectin (Conbr) in Complex with Beta-D-Ribofuranose To Be Published.
Page generated: Tue Dec 15 04:21:46 2020

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