Manganese in PDB 4gno: Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp

All present enzymatic activity of Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp:
4.1.1.32;

The structure of Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp, PDB code: 4gno was solved by T.A.Johnson, T.Holyoak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.30 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.792, 84.111, 118.564, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 19.4

The structure of Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Manganese atom in the Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp (pdb code 4gno). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp, PDB code: 4gno:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn702 b:9.0 occ:1.00 OD1 A:ASP311 2.1 9.3 1.0 O1 A:SPV705 2.1 10.8 1.0 O1G A:GTP701 2.2 8.9 1.0 NZ A:LYS244 2.3 8.9 1.0 NE2 A:HIS264 2.3 9.1 1.0 O2 A:SPV705 2.4 10.3 1.0 C1 A:SPV705 3.0 10.5 1.0 C2 A:SPV705 3.0 10.1 1.0 CG A:ASP311 3.1 10.4 1.0 CD2 A:HIS264 3.2 9.0 1.0 CE1 A:HIS264 3.2 9.1 1.0 OD2 A:ASP311 3.3 9.9 1.0 PG A:GTP701 3.4 9.4 1.0 CE A:LYS244 3.4 9.3 1.0 O3G A:GTP701 3.9 10.3 1.0 O2G A:GTP701 3.9 10.2 1.0 NZ A:LYS290 4.0 9.9 1.0 CE A:LYS290 4.1 9.5 1.0 O2' A:SPV705 4.2 12.8 1.0 O A:HOH857 4.2 9.4 1.0 O A:HOH868 4.3 10.8 1.0 ND1 A:HIS264 4.3 8.5 1.0 OG A:SER286 4.3 14.9 0.3 CG A:HIS264 4.4 8.5 1.0 CB A:ASP311 4.5 9.3 1.0 C3 A:SPV705 4.5 10.4 1.0 O3B A:GTP701 4.7 9.4 1.0 CD A:LYS244 4.7 9.1 1.0 O A:ASP311 4.9 10.0 1.0 CZ A:PHE485 5.0 10.3 1.0 CB A:SER286 5.0 15.3 0.7

Manganese binding site 2 out of 2 in the Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn703 b:9.7 occ:1.00 O2B A:GTP701 2.1 9.2 1.0 O2G A:GTP701 2.1 10.2 1.0 O A:HOH822 2.2 10.0 1.0 O A:HOH857 2.2 9.4 1.0 OG1 A:THR291 2.2 10.6 1.0 O A:HOH852 2.3 10.2 1.0 PG A:GTP701 3.3 9.4 1.0 PB A:GTP701 3.3 9.9 1.0 CB A:THR291 3.4 10.0 1.0 O3B A:GTP701 3.5 9.4 1.0 OD2 A:ASP310 3.8 9.7 1.0 O1G A:GTP701 3.9 8.9 1.0 O2A A:GTP701 4.0 10.8 1.0 N A:THR291 4.1 9.7 1.0 O A:HOH868 4.1 10.8 1.0 CA A:THR291 4.3 9.6 1.0 O1B A:GTP701 4.4 10.3 1.0 O A:ASP310 4.4 9.0 1.0 O3A A:GTP701 4.4 9.6 1.0 NH1 A:ARG405 4.4 9.3 1.0 CA A:GLY334 4.4 9.8 1.0 CG2 A:THR291 4.4 10.2 1.0 CG A:ASP310 4.5 9.6 1.0 O3G A:GTP701 4.5 10.3 1.0 OD1 A:ASP311 4.6 9.3 1.0 O A:PHE333 4.6 9.9 1.0 O A:HOH805 4.7 10.3 1.0 N A:VAL335 4.7 9.5 1.0 PA A:GTP701 4.8 10.4 1.0 CB A:LYS290 4.9 9.4 1.0

T.A.Johnson, T.Holyoak. The {Omega}-Loop Lid Domain of Phosphoenolpyruvate Carboxykinase Is Essential For Catalytic Function. Biochemistry V. 51 9547 2012.
ISSN: ISSN 0006-2960
PubMed: 23127136
DOI: 10.1021/BI301278T