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Manganese in PDB 4gbv: Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant

Enzymatic activity of Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant

All present enzymatic activity of Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant:
3.1.3.11;

Protein crystallography data

The structure of Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant, PDB code: 4gbv was solved by R.B.Honzatko, Y.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.10 / 2.90
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.690, 82.506, 166.284, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 24.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant (pdb code 4gbv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant, PDB code: 4gbv:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 4gbv

Go back to Manganese Binding Sites List in 4gbv
Manganese binding site 1 out of 2 in the Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn403

b:31.6
occ:1.00
 OD2 A:ASP118 2.2 29.9 1.0
O2 A:PO4402 2.4 38.3 1.0
OE2 A:GLU97 2.7 40.3 1.0
O A:LEU120 2.7 31.2 1.0
CD A:GLU97 3.0 41.2 1.0
OE1 A:GLU97 3.0 41.8 1.0
OE2 A:GLU98 3.2 38.5 1.0
CG A:ASP118 3.2 28.6 1.0
O4 A:PO4402 3.3 42.9 1.0
C A:LEU120 3.3 31.0 1.0
P A:PO4402 3.4 42.0 1.0
O A:HOH557 3.6 76.3 1.0
OD1 A:ASP118 3.6 29.5 1.0
N A:LEU120 3.7 30.4 1.0
CD A:PRO119 3.8 29.4 1.0
N A:ASP121 4.0 31.5 1.0
CA A:LEU120 4.1 30.6 1.0
O3 A:PO4402 4.1 39.6 1.0
CG A:GLU97 4.1 39.9 1.0
CB A:GLU97 4.1 39.2 1.0
N A:PRO119 4.3 29.3 1.0
CA A:ASP121 4.3 31.8 1.0
OD2 A:ASP74 4.3 48.9 1.0
CG A:PRO119 4.4 29.6 1.0
CD A:GLU98 4.4 40.7 1.0
CB A:ASP118 4.5 29.1 1.0
O A:HOH558 4.6 52.6 1.0
MN A:MN404 4.6 55.8 1.0
CA A:ASP118 4.6 29.0 1.0
C A:ASP118 4.6 29.0 1.0
O1 A:PO4402 4.6 40.4 1.0
CB A:LEU120 4.7 30.1 1.0
C A:PRO119 4.8 29.8 1.0

Manganese binding site 2 out of 2 in 4gbv

Go back to Manganese Binding Sites List in 4gbv
Manganese binding site 2 out of 2 in the Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Amp Complexes of Porcine Liver Fructose-1,6- Bisphosphatase Mutant A54L with 1,2-Ethanediol As Cryo-Protectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn404

b:55.8
occ:1.00
 OD1 A:ASP118 2.0 29.5 1.0
OD1 A:ASP121 2.3 31.4 1.0
O2 A:PO4402 2.5 38.3 1.0
OE1 A:GLU280 2.5 24.2 1.0
O3 A:PO4402 2.7 39.6 1.0
P A:PO4402 2.9 42.0 1.0
CG A:ASP121 3.0 33.1 1.0
CB A:ASP121 3.0 31.8 1.0
CA A:ASP121 3.2 31.8 1.0
CG A:ASP118 3.2 28.6 1.0
O1 A:PO4402 3.3 40.4 1.0
CD A:GLU280 3.3 25.3 1.0
CG A:GLU280 3.5 24.8 1.0
OE2 A:GLU97 3.6 40.3 1.0
C1 A:F6P401 3.7 26.3 1.0
OD2 A:ASP118 3.8 29.9 1.0
N A:GLY122 4.0 31.9 1.0
C A:ASP121 4.1 31.9 1.0
O3 A:F6P401 4.1 25.4 1.0
OD2 A:ASP121 4.3 35.3 1.0
N A:ASP121 4.3 31.5 1.0
CB A:ASP118 4.3 29.1 1.0
OE2 A:GLU280 4.3 28.8 1.0
O4 A:PO4402 4.4 42.9 1.0
C2 A:F6P401 4.5 25.2 1.0
C3 A:F6P401 4.5 25.3 1.0
MN A:MN403 4.6 31.6 1.0
NH1 A:ARG276 4.6 44.8 1.0
O2 A:F6P401 4.7 23.5 1.0
CD A:GLU97 4.8 41.2 1.0
O A:LEU120 4.8 31.2 1.0
O1 A:F6P401 4.9 28.6 1.0
C A:LEU120 5.0 31.0 1.0
CB A:GLU280 5.0 25.0 1.0

Reference:

R.B.Honzatko, Y.Gao, N.D.Ginder. Water Structure of the Central Hydrophobic Cavity of Mammalian Fructose-1,6-Bisphosphatase: A Potential Thermodynamic Determinant of Allowed Quaternary States To Be Published.
Page generated: Sat Oct 5 19:29:41 2024

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