Manganese in PDB 4g2c: DYP2 From Amycolatopsis Sp. Atcc 39116

The structure of DYP2 From Amycolatopsis Sp. Atcc 39116, PDB code: 4g2c was solved by M.E.Brown, T.Barros, M.C.Y.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.04 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.131, 77.952, 252.353, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 24.3

The structure of DYP2 From Amycolatopsis Sp. Atcc 39116 also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Manganese atom in the DYP2 From Amycolatopsis Sp. Atcc 39116 (pdb code 4g2c). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the DYP2 From Amycolatopsis Sp. Atcc 39116, PDB code: 4g2c:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the DYP2 From Amycolatopsis Sp. Atcc 39116


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of DYP2 From Amycolatopsis Sp. Atcc 39116 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn502 b:68.4 occ:1.00 OE2 A:GLU286 2.2 48.1 1.0 OE2 A:GLU260 2.3 33.7 1.0 O A:HOH677 2.3 33.9 1.0 CD A:GLU260 3.4 31.1 1.0 CD A:GLU286 3.5 41.8 1.0 OE1 A:GLU260 3.8 30.5 1.0 OH A:TYR190 3.9 27.8 1.0 NZ A:LYS257 3.9 33.9 1.0 OE1 A:GLU286 4.1 37.5 1.0 O A:GLU275 4.3 24.8 1.0 CA A:GLU275 4.4 34.9 1.0 CG A:GLU286 4.5 27.4 1.0 CG A:GLU275 4.6 47.3 1.0 O A:HOH709 4.6 31.5 1.0 O A:HOH821 4.6 44.2 1.0 CB A:GLU275 4.6 35.1 1.0 CZ A:TYR190 4.7 26.1 1.0 CG A:GLU260 4.7 31.7 1.0 CA A:GLY278 4.8 21.7 1.0 C A:GLU275 4.9 32.7 1.0 CE A:LYS257 5.0 30.6 1.0 O A:HOH820 5.0 35.1 1.0

Manganese binding site 2 out of 2 in the DYP2 From Amycolatopsis Sp. Atcc 39116


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of DYP2 From Amycolatopsis Sp. Atcc 39116 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn502 b:66.4 occ:1.00 OE2 B:GLU286 2.2 50.8 1.0 OE2 B:GLU260 2.3 54.2 1.0 CD B:GLU260 3.2 46.7 1.0 O B:ACT514 3.3 45.6 1.0 CD B:GLU286 3.5 43.6 1.0 OE1 B:GLU260 3.5 46.0 1.0 NZ B:LYS257 3.9 48.4 1.0 OH B:TYR190 3.9 37.6 1.0 C B:ACT514 3.9 48.7 1.0 OE1 B:GLU286 4.2 51.0 1.0 CG B:GLU275 4.3 44.6 1.0 OXT B:ACT514 4.4 47.7 1.0 CG B:GLU286 4.4 39.9 1.0 CA B:GLU275 4.5 42.1 1.0 O B:GLU275 4.5 34.1 1.0 CB B:GLU275 4.5 42.2 1.0 H1 B:ACT514 4.5 54.5 1.0 CG B:GLU260 4.6 40.9 1.0 H2 B:ACT514 4.6 54.5 1.0 CH3 B:ACT514 4.6 45.5 1.0 CZ B:TYR190 4.7 37.7 1.0 O B:HOH740 4.9 43.8 1.0 C B:GLU275 5.0 34.6 1.0

M.E.Brown, T.Barros, M.C.Chang. Identification and Characterization of A Multifunctional Dye Peroxidase From A Lignin-Reactive Bacterium. Acs Chem.Biol. V. 7 2074 2012.
ISSN: ISSN 1554-8929
PubMed: 23054399
DOI: 10.1021/CB300383Y